Community-level physiological profiling analyses show potential to identify the copiotrophic bacteria present in soil environments

Bacteria dominate the short-term assimilation of plant-derived N in soil

(2016) Robert Starke et al.   SOIL BIOLOGY & BIOCHEMISTRY

Silvibacterium bohemicum gen. nov. sp. nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park

(2016) Salvador Lladó et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation

(2015) Paula García-Fraile et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional screening of abundant bacteria from acidic forest soil indicates the metabolic potential of Acidobacteria subdivision 1 for polysaccharide decomposition

(2015) Salvador Lladó et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

(2015) Lucia Žifčáková et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of chlortetracycline on soil microbial communities: Comparisons of enzyme activities to the functional diversity via Biolog EcoPlates™

(2015) Bei Liu et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Impacts of zero tillage on soil enzyme activities, microbial characteristics and organic matter functional chemistry in temperate soils

(2015) S. Mangalassery et al.   EUROPEAN JOURNAL OF SOIL BIOLOGY

Microbial hotspots and hot moments in soil: Concept & review

(2015) Yakov Kuzyakov et al.   SOIL BIOLOGY & BIOCHEMISTRY

Reclamation of lignite mine areas with Triticum aestivum: The dynamics of soil functions and microbial communities

(2014) Anna Mastrogianni et al.   APPLIED SOIL ECOLOGY

Seeing the forest for the genes: using metagenomics to infer the aggregated traits of microbial communities

(2014) Noah Fierer et al.   Frontiers in Microbiology

Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED

(2013) Tomáš Větrovský et al.   BIOLOGY AND FERTILITY OF SOILS

False positives in Biolog EcoPlatesTM and MT2 MicroPlatesTM caused by calcium

(2013) Melissa L. Pierce et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Distinct Growth Strategies of Soil Bacteria as Revealed by Large-Scale Colony Tracking

(2011) Morten Ernebjerg et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of bacterial community during spontaneous succession on spoil heaps after brown coal mining

(2011) Michaela Urbanová et al.   FEMS MICROBIOLOGY ECOLOGY

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

(2011) Petr Baldrian et al.   ISME Journal

Low Pore Connectivity Increases Bacterial Diversity in Soil

(2010) J. K. Carson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Theory of island biogeography on a microscopic scale: organic aggregates as islands for aquatic pathogens

(2010) MM Lyons et al.   AQUATIC MICROBIAL ECOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Small-scale distribution of extracellular enzymes, fungal, and bacterial biomass in Quercus petraea forest topsoil

(2010) Petr Baldrian et al.   BIOLOGY AND FERTILITY OF SOILS

Enhanced root exudation induces microbial feedbacks to N cycling in a pine forest under long-term CO2 fumigation

(2010) Richard P. Phillips et al.   ECOLOGY LETTERS

Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil

(2010) Petr Baldrian et al.   PLANT AND SOIL

Minerals in soil select distinct bacterial communities in their microhabitats

(2009) Jennifer K. Carson et al.   FEMS MICROBIOLOGY ECOLOGY

A comprehensive survey of soil acidobacterial diversity using pyrosequencing and clone library analyses

(2009) Ryan T Jones et al.   ISME Journal

Innovative Methods for Soil DNA Purification Tested in Soils with Widely Differing Characteristics

(2008) M. Sagova-Mareckova et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Assessment of changes in the microbial community of constructed wetland mesocosms in response to acid mine drainage exposure

(2007) Kela P. Weber et al.   WATER RESEARCH