Genomic Potential for Polysaccharide Deconstruction in Bacteria

Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi

(2015) Ivana Eichlerová et al.   Fungal Ecology

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods

(2014) Petr Baldrian et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Microbial community composition explains soil respiration responses to changing carbon inputs along an Andes-to-Amazon elevation gradient

(2014) Jeanette Whitaker et al.   JOURNAL OF ECOLOGY

Cellulolytic potential under environmental changes in microbial communities from grassland litter

(2014) Renaud Berlemont et al.   Frontiers in Microbiology

The chitinolytic machinery ofSerratia marcescens- a model system for enzymatic degradation of recalcitrant polysaccharides

(2013) Gustav Vaaje-Kolstad et al.   FEBS Journal

Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes

(2013) Amy E Zimmerman et al.   ISME Journal

A functional glycogen biosynthesis pathway inLactobacillus acidophilus: expression and analysis of theglgoperon

(2013) Yong Jun Goh et al.   MOLECULAR MICROBIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils

(2013) Hannah L. Woo et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries

(2013) Mari Nyyssönen et al.   Frontiers in Microbiology

Bacterial chitin degradation—mechanisms and ecophysiological strategies

(2013) Sara Beier et al.   Frontiers in Microbiology

Phylogenetic Distribution of Potential Cellulases in Bacteria

(2012) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial abundance and composition influence litter decomposition response to environmental change

(2012) Steven D. Allison et al.   ECOLOGY

A trait-based approach for modelling microbial litter decomposition

(2012) S. D. Allison   ECOLOGY LETTERS

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

(2012) Martina Štursová et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

Metabolic specialization and the assembly of microbial communities

(2012) David R Johnson et al.   ISME Journal

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Complex Carbohydrate Utilization by the Healthy Human Microbiome

(2012) Brandi L. Cantarel et al.   PLoS One

Genomics of Aerobic Cellulose Utilization Systems in Actinobacteria

(2012) Iain Anderson et al.   PLoS One

Phylogenomic Relationships between Amylolytic Enzymes from 85 Strains of Fungi

(2012) Wanping Chen et al.   PLoS One

Enhanced cellulose degradation by targeted integration of a cohesin-fused  -glucosidase into the Clostridium thermocellum cellulosome

(2012) G. Gefen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial diversity of cellulose hydrolysis

(2011) David B Wilson   CURRENT OPINION IN MICROBIOLOGY

PATRIC: the Comprehensive Bacterial Bioinformatics Resource with a Focus on Human Pathogenic Species

(2011) Joseph J. Gillespie et al.   INFECTION AND IMMUNITY

The Importance of Chitin in the Marine Environment

(2011) Claudiana P. Souza et al.   MARINE BIOTECHNOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Environmental and Gut Bacteroidetes: The Food Connection

(2011) François Thomas et al.   Frontiers in Microbiology

The Chitinolytic Activity of Listeria monocytogenes EGD Is Regulated by Carbohydrates but Also by the Virulence Regulator PrfA

(2010) M. H. Larsen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accessing the SEED Genome Databases via Web Services API: Tools for Programmers

(2010) Terry Disz et al.   BMC BIOINFORMATICS

Selectivity in Mammalian Extinction Risk and Threat Types: a New Measure of Phylogenetic Signal Strength in Binary Traits

(2010) SUSANNE A. FRITZ et al.   CONSERVATION BIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Chitinase genes revealed and compared in bacterial isolates, DNA extracts and a metagenomic library from a phytopathogen-suppressive soil

(2009) Karin Hjort et al.   FEMS MICROBIOLOGY ECOLOGY

Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus

(2008) R. T. DeBoy et al.   JOURNAL OF BACTERIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH