Immunoglobulin gene analysis as a tool for investigating human immune responses
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Immunoglobulin gene analysis as a tool for investigating human immune responses
Authors
Keywords
-
Journal
IMMUNOLOGICAL REVIEWS
Volume 284, Issue 1, Pages 132-147
Publisher
Wiley
Online
2018-06-27
DOI
10.1111/imr.12659
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Evidence of Alternative Modes of B Cell Activation Involving Acquired Fab Regions of N -Glycosylation in Antibody-Secreting Cells Infiltrating the Labial Salivary Glands of Patients With Sjögren’s Syndrome
- (2018) Kristi A. Koelsch et al. Arthritis & Rheumatology
- Insights into the Structural Basis of Antibody Affinity Maturation from Next-Generation Sequencing
- (2018) Arjun K. Mishra et al. Frontiers in Immunology
- Direct measurement of B-cell receptor repertoire’s composition and variation in systemic lupus erythematosus
- (2017) S Liu et al. GENES AND IMMUNITY
- A Phylogenetic Codon Substitution Model for Antibody Lineages
- (2017) Kenneth B. Hoehn et al. GENETICS
- Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads
- (2017) Alexander Shlemov et al. JOURNAL OF IMMUNOLOGY
- Endogenous Calcitriol Synthesis Controls the Humoral IgE Response in Mice
- (2017) Juliane Lindner et al. JOURNAL OF IMMUNOLOGY
- Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data
- (2017) Namita T. Gupta et al. JOURNAL OF IMMUNOLOGY
- Comparative Analysis of Single-Cell RNA Sequencing Methods
- (2017) Christoph Ziegenhain et al. MOLECULAR CELL
- An atlas of B-cell clonal distribution in the human body
- (2017) Wenzhao Meng et al. NATURE BIOTECHNOLOGY
- Promiscuous antibodies characterised by their physico-chemical properties: From sequence to structure and back
- (2017) Julie M.J. Laffy et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- A Phylogenetic Codon Substitution Model for Antibody Lineages
- (2017) Kenneth B. Hoehn et al. GENETICS
- Antibodies to Cyclic Citrullinated Peptides in Patients With Juvenile Idiopathic Arthritis and Patients With Rheumatoid Arthritis: Shared Expression of the Inherently Autoreactive 9G4 Idiotype
- (2017) Hannah Peckham et al. Arthritis & Rheumatology
- How B-Cell Receptor Repertoire Sequencing Can Be Enriched with Structural Antibody Data
- (2017) Aleksandr Kovaltsuk et al. Frontiers in Immunology
- Different Somatic Hypermutation Levels among Antibody Subclasses Disclosed by a New Next-Generation Sequencing-Based Antibody Repertoire Analysis
- (2017) Kazutaka Kitaura et al. Frontiers in Immunology
- A Streamlined Approach to Antibody Novel Germline Allele Prediction and Validation
- (2017) Ben S. Wendel et al. Frontiers in Immunology
- Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data
- (2017) Felix Breden et al. Frontiers in Immunology
- A Haystack Heuristic for Autoimmune Disease Biomarker Discovery Using Next-Gen Immune Repertoire Sequencing Data
- (2017) Leonard Apeltsin et al. Scientific Reports
- BASIC: BCR assembly from single cells
- (2016) Stefan Canzar et al. BIOINFORMATICS
- Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer
- (2016) Lisle E. Mose et al. BIOINFORMATICS
- A new high-throughput sequencing method for determining diversity and similarity of T cell receptor (TCR) α and β repertoires and identifying potential new invariant TCR α chains
- (2016) Kazutaka Kitaura et al. BMC IMMUNOLOGY
- Deep sequencing and human antibody repertoire analysis
- (2016) Scott D Boyd et al. CURRENT OPINION IN IMMUNOLOGY
- Determinants of VH1-46 Cross-Reactivity to Pemphigus Vulgaris Autoantigen Desmoglein 3 and Rotavirus Antigen VP6
- (2016) Michael Jeffrey Cho et al. JOURNAL OF IMMUNOLOGY
- ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation
- (2016) Jinwoo Leem et al. mAbs
- Structural diversity in a human antibody germline library
- (2016) Alexey Teplyakov et al. mAbs
- Molecular-level analysis of the serum antibody repertoire in young adults before and after seasonal influenza vaccination
- (2016) Jiwon Lee et al. NATURE MEDICINE
- Human antibody repertoire after VSV-Ebola vaccination identifies novel targets and virus-neutralizing IgM antibodies
- (2016) Surender Khurana et al. NATURE MEDICINE
- Ultra-high-throughput sequencing of the immune receptor repertoire from millions of lymphocytes
- (2016) Jonathan R McDaniel et al. Nature Protocols
- Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires
- (2016) Brandon J. DeKosky et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Coming-of-Age of Antibodies in Cancer Therapeutics
- (2016) B. Vijayalakshmi Ayyar et al. TRENDS IN PHARMACOLOGICAL SCIENCES
- Hotspots for Vitamin–Steroid–Thyroid Hormone Response Elements Within Switch Regions of Immunoglobulin Heavy Chain Loci Predict a Direct Influence of Vitamins and Hormones on B Cell Class Switch Recombination
- (2016) Julia L. Hurwitz et al. VIRAL IMMUNOLOGY
- Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity
- (2016) Martin M. Corcoran et al. Nature Communications
- Statistical inference of a convergent antibody repertoire response to influenza vaccine
- (2016) Nicolas B. Strauli et al. Genome Medicine
- Lower IgG somatic hypermutation rates during acute dengue virus infection is compatible with a germinal center-independent B cell response
- (2016) Elizabeth Ernestina Godoy-Lozano et al. Genome Medicine
- Likelihood-Based Inference of B Cell Clonal Families
- (2016) Duncan K. Ralph et al. PLoS Computational Biology
- Significant Differences in Physicochemical Properties of Human Immunoglobulin Kappa and Lambda CDR3 Regions
- (2016) Catherine L. Townsend et al. Frontiers in Immunology
- Transitional B Cells in Early Human B Cell Development – Time to Revisit the Paradigm?
- (2016) Victoria G. Martin et al. Frontiers in Immunology
- Accurate and predictive antibody repertoire profiling by molecular amplification fingerprinting
- (2016) T. A. Khan et al. Science Advances
- Prostaglandins E2 signal mediated by receptor subtype EP2 promotes IgE production in vivo and contributes to asthma development
- (2016) Yuhan Gao et al. Scientific Reports
- Immune Repertoire Diversity Correlated with Mortality in Avian Influenza A (H7N9) Virus Infected Patients
- (2016) Dongni Hou et al. Scientific Reports
- The ageing human B cell repertoire: a failure of selection?
- (2015) D. K. Dunn-Walters CLINICAL AND EXPERIMENTAL IMMUNOLOGY
- Aging affects B-cell antigen receptor repertoire diversity in primary and secondary lymphoid tissues
- (2015) Hilla Tabibian-Keissar et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- BCR repertoire sequencing: different patterns of B-cell activation after two Meningococcal vaccines
- (2015) Jacob D Galson et al. IMMUNOLOGY AND CELL BIOLOGY
- B cell Variable genes have evolved their codon usage to focus the targeted patterns of somatic mutation on the complementarity determining regions
- (2015) Jasmine Saini et al. MOLECULAR IMMUNOLOGY
- Cell- and nuclear-penetrating anti-dsDNA autoantibodies have multiple arginines in CDR3 of VH and increase cellular level of pERK and Bcl-2 in mesangial cells
- (2015) Sae-Ran Im et al. MOLECULAR IMMUNOLOGY
- Diversity, cellular origin and autoreactivity of antibody-secreting cell population expansions in acute systemic lupus erythematosus
- (2015) Christopher M Tipton et al. NATURE IMMUNOLOGY
- MiXCR: software for comprehensive adaptive immunity profiling
- (2015) Dmitriy A Bolotin et al. NATURE METHODS
- The analysis of clonal expansions in normal and autoimmune B cell repertoires
- (2015) Uri Hershberg et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Inferring processes underlying B-cell repertoire diversity
- (2015) Yuval Elhanati et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Quantifying evolutionary constraints on B-cell affinity maturation
- (2015) Connor O. McCoy et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales
- (2015) Gur Yaari et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Ageing of the B-cell repertoire
- (2015) Victoria Martin et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles
- (2015) Daniel Gadala-Maria et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Facile Discovery of a Diverse Panel of Anti-Ebola Virus Antibodies by Immune Repertoire Mining
- (2015) Bo Wang et al. Scientific Reports
- In-Depth Assessment of Within-Individual and Inter-Individual Variation in the B Cell Receptor Repertoire
- (2015) Jacob D. Galson et al. Frontiers in Immunology
- pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires
- (2014) Jason A. Vander Heiden et al. BIOINFORMATICS
- Human Responses to Influenza Vaccination Show Seroconversion Signatures and Convergent Antibody Rearrangements
- (2014) Katherine J.L. Jackson et al. Cell Host & Microbe
- Human CD19 and CD40L deficiencies impair antibody selection and differentially affect somatic hypermutation
- (2014) Menno C. van Zelm et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- Antibody-Specific Model of Amino Acid Substitution for Immunological Inferences from Alignments of Antibody Sequences
- (2014) Alexander Mirsky et al. MOLECULAR BIOLOGY AND EVOLUTION
- Innate lymphoid cells integrate stromal and immunological signals to enhance antibody production by splenic marginal zone B cells
- (2014) Giuliana Magri et al. NATURE IMMUNOLOGY
- In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire
- (2014) Brandon J DeKosky et al. NATURE MEDICINE
- Towards error-free profiling of immune repertoires
- (2014) Mikhail Shugay et al. NATURE METHODS
- IGHV1-69 B Cell Chronic Lymphocytic Leukemia Antibodies Cross-React with HIV-1 and Hepatitis C Virus Antigens as Well as Intestinal Commensal Bacteria
- (2014) Kwan-Ki Hwang et al. PLoS One
- High-Throughput Sequencing of Human Immunoglobulin Variable Regions with Subtype Identification
- (2014) Merle Schanz et al. PLoS One
- Redemption of autoantibodies on anergic B cells by variable-region glycosylation and mutation away from self-reactivity
- (2014) Z. Sabouri et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Antibody modeling assessment II. Structures and models
- (2014) Alexey Teplyakov et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Blind prediction performance of RosettaAntibody 3.0: Grafting, relaxation, kinematic loop modeling, and full CDR optimization
- (2014) Brian D. Weitzner et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Differences in the Composition of the Human Antibody Repertoire by B Cell Subsets in the Blood
- (2014) Eva Szymanska Mroczek et al. Frontiers in Immunology
- Reconstructing a B-Cell Clonal Lineage. II. Mutation, Selection, and Affinity Maturation
- (2014) Thomas B. Kepler et al. Frontiers in Immunology
- Somatic Hypermutations Confer Rheumatoid Factor Activity in Hepatitis C Virus-Associated Mixed Cryoglobulinemia
- (2013) Edgar D. Charles et al. ARTHRITIS AND RHEUMATISM
- Convergent Antibody Signatures in Human Dengue
- (2013) Poornima Parameswaran et al. Cell Host & Microbe
- Human lymphocyte repertoires in ageing
- (2013) Scott D Boyd et al. CURRENT OPINION IN IMMUNOLOGY
- High-throughput sequencing of the paired human immunoglobulin heavy and light chain repertoire
- (2013) Brandon J DeKosky et al. NATURE BIOTECHNOLOGY
- Preparing Unbiased T-Cell Receptor and Antibody cDNA Libraries for the Deep Next Generation Sequencing Profiling
- (2013) Ilgar Z. Mamedov et al. Frontiers in Immunology
- The IGHV1-69/IGHJ3 recombinations of unmutated CLL are distinct from those of normal B cells
- (2012) F. Forconi et al. BLOOD
- IGHV3-21 Gene Frequency in a Swedish Cohort of Patients With Newly Diagnosed Chronic Lymphocytic Leukemia
- (2012) Nicola Cahill et al. Clinical Lymphoma Myeloma & Leukemia
- B cell TLRs and induction of immunoglobulin class-switch DNA recombination
- (2012) Egest et al. Frontiers in Bioscience-Landmark
- Characterization of a high-affinity human antibody with a disulfide bridge in the third complementarity-determining region of the heavy chain
- (2012) Juan Carlos Almagro et al. JOURNAL OF MOLECULAR RECOGNITION
- Forum: Immunology: Allergy challenged
- (2012) David Artis et al. NATURE
- High abundance of plasma cells secreting transglutaminase 2–specific IgA autoantibodies with limited somatic hypermutation in celiac disease intestinal lesions
- (2012) Roberto Di Niro et al. NATURE MEDICINE
- Quantifying selection in high-throughput Immunoglobulin sequencing data sets
- (2012) Gur Yaari et al. NUCLEIC ACIDS RESEARCH
- Aggregation-resistant domain antibodies engineered with charged mutations near the edges of the complementarity-determining regions
- (2012) J. M. Perchiacca et al. PROTEIN ENGINEERING DESIGN & SELECTION
- Age-Related Changes in Human Peripheral Blood IGH Repertoire Following Vaccination
- (2012) Yu-Chang Bryan Wu et al. Frontiers in Immunology
- Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages
- (2011) Alexander Ademokun et al. AGING CELL
- A BAFF/APRIL-dependent TLR3-stimulated pathway enhances the capacity of rheumatoid synovial fibroblasts to induce AID expression and Ig class-switching in B cells
- (2011) M. Bombardieri et al. ANNALS OF THE RHEUMATIC DISEASES
- Synovial fibroblasts promote immunoglobulin class switching by a mechanism involving BAFF
- (2011) Ghada Alsaleh et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Rep-Seq: uncovering the immunological repertoire through next-generation sequencing
- (2011) Jennifer Benichou et al. IMMUNOLOGY
- The PTPN22 allele encoding an R620W variant interferes with the removal of developing autoreactive B cells in humans
- (2011) Laurence Menard et al. JOURNAL OF CLINICAL INVESTIGATION
- B cell–helper neutrophils stimulate the diversification and production of immunoglobulin in the marginal zone of the spleen
- (2011) Irene Puga et al. NATURE IMMUNOLOGY
- High-Resolution Description of Antibody Heavy-Chain Repertoires in Humans
- (2011) Ramy Arnaout et al. PLoS One
- Differential regulation of self-reactivity discriminates between IgG+ human circulating memory B cells and bone marrow plasma cells
- (2011) J. F. Scheid et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Relationship between CD27 Negative and Positive B Cell Populations in Human Peripheral Blood
- (2011) Yu-Chang Bryan Wu et al. Frontiers in Immunology
- High-throughput immunoglobulin repertoire analysis distinguishes between human IgM memory and switched memory B-cell populations
- (2010) Y.-C. Wu et al. BLOOD
- Estrogen Receptors Bind to and Activate theHOXC4/HoxC4Promoter to Potentiate HoxC4-mediated Activation-induced Cytosine Deaminase Induction, Immunoglobulin Class Switch DNA Recombination, and Somatic Hypermutation
- (2010) Thach Mai et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Secondary Immunization Generates Clonally Related Antigen-Specific Plasma Cells and Memory B Cells
- (2010) D. Frolich et al. JOURNAL OF IMMUNOLOGY
- Monoclonal antibodies isolated without screening by analyzing the variable-gene repertoire of plasma cells
- (2010) Sai T Reddy et al. NATURE BIOTECHNOLOGY
- The transmembrane activator TACI triggers immunoglobulin class switching by activating B cells through the adaptor MyD88
- (2010) Bing He et al. NATURE IMMUNOLOGY
- Molecular evidence for EBV and CMV persistence in a subset of patients with chronic lymphocytic leukemia expressing stereotyped IGHV4-34 B-cell receptors
- (2009) E Kostareli et al. LEUKEMIA
- Rapid generation of fully human monoclonal antibodies specific to a vaccinating antigen
- (2009) Kenneth Smith et al. Nature Protocols
- Measurement and Clinical Monitoring of Human Lymphocyte Clonality by Massively Parallel V-D-J Pyrosequencing
- (2009) S. D. Boyd et al. Science Translational Medicine
- T Follicular Helper (TFH) Cells in Normal and Dysregulated Immune Responses
- (2008) Cecile King et al. Annual Review of Immunology
- Antisense transcripts from immunoglobulin heavy-chain locus V(D)J and switch regions
- (2008) T. Perlot et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search