Population genomic data reveal extreme geographic subdivision and novel conservation actions for the declining foothill yellow-legged frog

Range instability leads to cytonuclear discordance in a morphologically cryptic ground squirrel species complex

(2017) Mark A. Phuong et al.   MOLECULAR ECOLOGY

The K = 2 conundrum

(2017) Jasmine K. Janes et al.   MOLECULAR ECOLOGY

Geographical features are the predominant driver of molecular diversification in widely distributed North American whipsnakes

(2017) Kyle A. O'Connell et al.   MOLECULAR ECOLOGY

Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens

(2017) Sara Ruane et al.   Molecular Ecology Resources

Locating rearrangement events in a phylogeny based on highly fragmented assemblies

(2016) Chunfang Zheng et al.   BMC GENOMICS

Foothill Yellow-Legged Frog (Rana boylii) Oviposition Site Choice at Multiple Spatial Scales

(2016) Amy J. Lind et al.   JOURNAL OF HERPETOLOGY

CITIZEN SCIENTISTS MONITOR A DEADLY FUNGUS THREATENING AMPHIBIAN COMMUNITIES IN NORTHERN COASTAL CALIFORNIA, USA

(2016) Ecoclub Amphibian Group et al.   JOURNAL OF WILDLIFE DISEASES

Genomic data reveal ancient microendemism in forest scorpions across the California Floristic Province

(2016) Robert W. Bryson et al.   MOLECULAR ECOLOGY

RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data

(2016) Sandra L. Hoffberg et al.   Molecular Ecology Resources

Amphibian molecular ecology and how it has informed conservation

(2015) Evan McCartney-Melstad et al.   MOLECULAR ECOLOGY

Fixing Formalin: A Method to Recover Genomic-Scale DNA Sequence Data from Formalin-Fixed Museum Specimens Using High-Throughput Sequencing

(2015) Sarah M. Hykin et al.   PLoS One

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

(2014) Deren A. R. Eaton   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Population declines lead to replicate patterns of internal range structure at the tips of the distribution of the California red-legged frog (Rana draytonii)

(2014) Jonathan Q. Richmond et al.   BIOLOGICAL CONSERVATION

XSEDE: Accelerating Scientific Discovery

(2014) John Towns et al.   COMPUTING IN SCIENCE & ENGINEERING

Amphibians in the climate vise: loss and restoration of resilience of montane wetland ecosystems in the western US

(2014) Maureen E Ryan et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Effects of carbaryl on species interactions of the foothill yellow legged frog (Rana boylii) and the Pacific treefrog (Pseudacris regilla)

(2014) Jacob L. Kerby et al.   HYDROBIOLOGIA

The advantages of going large: genome-wide SNPs clarify the complex population history and systematics of the threatened western pond turtle

(2014) Phillip Q. Spinks et al.   MOLECULAR ECOLOGY

Multilocus phylogeographic assessment of the California Mountain Kingsnake (Lampropeltis zonata) suggests alternative patterns of diversification for the California Floristic Province

(2013) E. A. Myers et al.   MOLECULAR ECOLOGY

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Effects of Flow Regimes Altered by Dams on Survival, Population Declines, and Range-Wide Losses of California River-Breeding Frogs

(2012) SARAH J. KUPFERBERG et al.   CONSERVATION BIOLOGY

Disease-Driven Amphibian Declines Alter Ecosystem Processes in a Tropical Stream

(2012) M. R. Whiles et al.   ECOSYSTEMS

The disappearing northern leopard frog (Lithobates pipiens): conservation genetics and implications for remnant populations in western Nevada

(2012) Serena D. Rogers et al.   Ecology and Evolution

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Rangewide phylogeography and landscape genetics of the Western U.S. endemic frog Rana boylii (Ranidae): implications for the conservation of frogs and rivers

(2010) Amy J. Lind et al.   CONSERVATION GENETICS

Pesticide distributions and population declines of California, USA, alpine frogs, Rana muscosa and Rana sierrae

(2010) David F. Bradford et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Nuclear gene phylogeography reveals the historical legacy of an ancient inland sea on lineages of the western pond turtle,Emys marmoratain California

(2009) PHILLIP Q. SPINKS et al.   MOLECULAR ECOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE