SWI/SNF and RSC cooperate to reposition and evict promoter nucleosomes at highly expressed genes in yeast

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Genomic Nucleosome Organization Reconstituted with Pure Proteins

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Nucleosome repositioning underlies dynamic gene expression

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The ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacingin vivo

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MNase titration reveals differences between nucleosome occupancy and chromatin accessibility

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Molecular mechanisms of ribosomal protein gene coregulation

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Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation

(2015) Hongfang Qiu et al.   GENOME RESEARCH

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility inDrosophila melanogaster

(2015) Răzvan V. Chereji et al.   NUCLEIC ACIDS RESEARCH

The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism

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Functional roles of nucleosome stability and dynamics

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RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast

(2014) Dwaipayan Ganguli et al.   GENOME RESEARCH

Mediator, TATA-binding Protein, and RNA Polymerase II Contribute to Low Histone Occupancy at Active Gene Promoters in Yeast

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The TAF9 C-Terminal Conserved Region Domain Is Required for SAGA and TFIID Promoter Occupancy To Promote Transcriptional Activation

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The RSC Complex Localizes to Coding Sequences to Regulate Pol II and Histone Occupancy

(2014) Marla M. Spain et al.   MOLECULAR CELL

Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerases

(2014) Hope A. Cole et al.   NUCLEIC ACIDS RESEARCH

The RSC chromatin remodeling complex has a crucial role in the complete remodeler set for yeast PHO5 promoter opening

(2014) Sanja Musladin et al.   NUCLEIC ACIDS RESEARCH

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription

(2013) Harm van Bakel et al.   PLoS Genetics

Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers

(2012) Kuangyu Yen et al.   CELL

Chromatin and Transcription in Yeast

(2012) Oliver J. Rando et al.   GENETICS

Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

(2012) Swaminathan Venkatesh et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcriptional activation of yeast genes disrupts intragenic nucleosome phasing

(2012) Feng Cui et al.   NUCLEIC ACIDS RESEARCH

Stable and dynamic nucleosome states during a meiotic developmental process

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(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization

(2011) T. Gkikopoulos et al.   SCIENCE

Nucleosomes and the accessibility problem

(2011) Xin Wang et al.   TRENDS IN GENETICS

Mechanisms that Specify Promoter Nucleosome Location and Identity

(2009) Paul D. Hartley et al.   CELL

SWI/SNF and Asf1p Cooperate To Displace Histones during Induction of the Saccharomyces cerevisiae HO Promoter

(2009) T. Gkikopoulos et al.   MOLECULAR AND CELLULAR BIOLOGY

The logic of chromatin architecture and remodelling at promoters

(2009) Bradley R. Cairns   NATURE

Nucleosome positioning and gene regulation: advances through genomics

(2009) Cizhong Jiang et al.   NATURE REVIEWS GENETICS

Stress-Dependent Dynamics of Global Chromatin Remodeling in Yeast: Dual Role for SWI/SNF in the Heat Shock Stress Response

(2008) S. Shivaswamy et al.   MOLECULAR AND CELLULAR BIOLOGY

A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters

(2008) Gwenael Badis et al.   MOLECULAR CELL

Activator Control of Nucleosome Occupancy in Activation and Repression of Transcription

(2008) Gene O Bryant et al.   PLOS BIOLOGY