A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription
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Title
A Compendium of Nucleosome and Transcript Profiles Reveals Determinants of Chromatin Architecture and Transcription
Authors
Keywords
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Journal
PLoS Genetics
Volume 9, Issue 5, Pages e1003479
Publisher
Public Library of Science (PLoS)
Online
2013-05-03
DOI
10.1371/journal.pgen.1003479
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Note: Only part of the references are listed.- Genome-wide Nucleosome Specificity and Directionality of Chromatin Remodelers
- (2012) Kuangyu Yen et al. CELL
- Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function
- (2012) Colin R. Lickwar et al. NATURE
- NIH Image to ImageJ: 25 years of image analysis
- (2012) Caroline A Schneider et al. NATURE METHODS
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- (2012) Itay Tirosh et al. GENOME BIOLOGY
- Potential role of the histone chaperone, CAF-1, in transcription
- (2011) Hye-Jin Kim et al. BMB Reports
- Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein
- (2011) C. F. Kurat et al. GENES & DEVELOPMENT
- Remodelers Organize Cellular Chromatin by Counteracting Intrinsic Histone-DNA Sequence Preferences in a Class-Specific Manner
- (2011) Y. M. Moshkin et al. MOLECULAR AND CELLULAR BIOLOGY
- H3K4 Trimethylation by Set1 Promotes Efficient Termination by the Nrd1-Nab3-Sen1 Pathway
- (2011) N. Terzi et al. MOLECULAR AND CELLULAR BIOLOGY
- Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes
- (2011) Jason M. Rizzo et al. NUCLEIC ACIDS RESEARCH
- A Role for Snf2-Related Nucleosome-Spacing Enzymes in Genome-Wide Nucleosome Organization
- (2011) T. Gkikopoulos et al. SCIENCE
- A Packing Mechanism for Nucleosome Organization Reconstituted Across a Eukaryotic Genome
- (2011) Z. Zhang et al. SCIENCE
- Substantial Histone Reduction Modulates Genomewide Nucleosomal Occupancy and Global Transcriptional Output
- (2011) Barbara Celona et al. PLOS BIOLOGY
- Trait Variation in Yeast Is Defined by Population History
- (2011) Jonas Warringer et al. PLoS Genetics
- Spt10 and Spt21 Are Required for Transcriptional Silencing in Saccharomyces cerevisiae
- (2010) Jennifer S. Chang et al. EUKARYOTIC CELL
- Control of Chromatin Structure by Spt6: Different Consequences in Coding and Regulatory Regions
- (2010) I. Ivanovska et al. MOLECULAR AND CELLULAR BIOLOGY
- The Telomere-Binding Protein Tbf1 Demarcates snoRNA Gene Promoters in Saccharomyces cerevisiae
- (2010) Milena Preti et al. MOLECULAR CELL
- A preoccupied position on nucleosomes
- (2010) B Franklin Pugh NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Role of Nucleosome Positioning in the Evolution of Gene Regulation
- (2010) Alexander M. Tsankov et al. PLOS BIOLOGY
- Quantitative Test of the Barrier Nucleosome Model for Statistical Positioning of Nucleosomes Up- and Downstream of Transcription Start Sites
- (2010) Wolfram Möbius et al. PLoS Computational Biology
- The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets
- (2009) J. W. Nicol et al. BIOINFORMATICS
- Mechanisms that Specify Promoter Nucleosome Location and Identity
- (2009) Paul D. Hartley et al. CELL
- High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
- (2009) A. Weiner et al. GENOME RESEARCH
- Histone Chaperone Spt16 Promotes Redeposition of the Original H3-H4 Histones Evicted by Elongating RNA Polymerase
- (2009) Adil Jamai et al. MOLECULAR CELL
- Interaction of Transcriptional Regulators with Specific Nucleosomes across the Saccharomyces Genome
- (2009) R. Thomas Koerber et al. MOLECULAR CELL
- Bidirectional promoters generate pervasive transcription in yeast
- (2009) Zhenyu Xu et al. NATURE
- Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
- (2009) Helen Neil et al. NATURE
- Quantification of the yeast transcriptome by single-molecule sequencing
- (2009) Doron Lipson et al. NATURE BIOTECHNOLOGY
- Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo
- (2009) Yong Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Are nucleosome positions in vivo primarily determined by histone–DNA sequence preferences?
- (2009) Arnold Stein et al. NUCLEIC ACIDS RESEARCH
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome
- (2008) T. N. Mavrich et al. GENOME RESEARCH
- A Library of Yeast Transcription Factor Motifs Reveals a Widespread Function for Rsc3 in Targeting Nucleosome Exclusion at Promoters
- (2008) Gwenael Badis et al. MOLECULAR CELL
- The DNA-encoded nucleosome organization of a eukaryotic genome
- (2008) Noam Kaplan et al. NATURE
- The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
- (2008) U. Nagalakshmi et al. SCIENCE
- Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome
- (2008) Vanessa Cheung et al. PLOS BIOLOGY
- Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation
- (2008) Sushma Shivaswamy et al. PLOS BIOLOGY
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