Impact of supplementation on deleterious mutation distribution in an exploited salmonid

Predicting the genetic impact of stocking in Brook Charr (Salvelinus fontinalis ) by combining RAD sequencing and modeling of explanatory variables

(2017) Justine Létourneau et al.   Evolutionary Applications

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

Genetic Diversity and the Efficacy of Purifying Selection across Plant and Animal Species

(2017) Jun Chen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Do genetic drift and accumulation of deleterious mutations preclude adaptation? Empirical investigation using RADseq in a northern lacustrine fish

(2017) Charles Perrier et al.   MOLECULAR ECOLOGY

Survival and divergence in a small group: The extraordinary genomic history of the endangered Apennine brown bear stragglers

(2017) Andrea Benazzo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Parallel epigenetic modifications induced by hatchery rearing in a Pacific salmon

(2017) Jérémy Le Luyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene duplication can impart fragility, not robustness, in the yeast protein interaction network

(2017) Guillaume Diss et al.   SCIENCE

Prediction of harmful variants on mitochondrial genes: Test of habitat-dependent and demographic effects in a euryhaline fish

(2017) Anti Vasemägi et al.   Ecology and Evolution

Relaxed Selection During a Recent Human Expansion

(2017) Stephan Peischl et al.   GENETICS

Recombination Rate Variation, Hitchhiking, and Demographic History Shape Deleterious Load in Poplar

(2016) M. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses

(2016) S. Bernatchez et al.   MOLECULAR ECOLOGY

Seascape genomics provides evidence for thermal adaptation and current-mediated population structure in American lobster (Homarus americanus )

(2016) Laura Benestan et al.   MOLECULAR ECOLOGY

The Accumulation of Deleterious Mutations as a Consequence of Domestication and Improvement in Sunflowers and Other Compositae Crops

(2015) Sebastien Renaut et al.   MOLECULAR BIOLOGY AND EVOLUTION

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

(2015) M. Laporte et al.   MOLECULAR ECOLOGY

Dominance of Deleterious Alleles Controls the Response to a Population Bottleneck

(2015) Daniel J. Balick et al.   PLoS Genetics

Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Québec, Canada

(2014) Eliane Valiquette et al.   Evolutionary Applications

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

(2014) D. J. Macqueen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Hierarchical population structure and genetic diversity of lake trout (Salvelinus namaycush) in a dendritic system in Northern Labrador

(2013) Gregory R. McCracken et al.   FRESHWATER BIOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

A resource of genome-wide single-nucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel

(2013) J. M. Pujolar et al.   Molecular Ecology Resources

Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant

(2012) Aneil F. Agrawal et al.   Annual Review of Ecology Evolution and Systematics

Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations

(2012) Fabien C. Lamaze et al.   Evolutionary Applications

The Effects of Deleterious Mutations on Evolution at Linked Sites

(2012) Brian Charlesworth   GENETICS

Random forests for genomic data analysis

(2012) Xi Chen et al.   GENOMICS

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Overview of random forest methodology and practical guidance with emphasis on computational biology and bioinformatics

(2012) Anne-Laure Boulesteix et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Random Forests for Genetic Association Studies

(2011) Benjamin A Goldstein et al.   Statistical Applications in Genetics and Molecular Biology

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Population structure of lake trout (Salvelinus namaycush) in a large glacial-fed lake inferred from microsatellite DNA and morphological analysis

(2010) Sara Northrup et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

(2010) A. D. MARIE et al.   MOLECULAR ECOLOGY

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

The genetics of inbreeding depression

(2009) Deborah Charlesworth et al.   NATURE REVIEWS GENETICS

Variable Introgression from Supplemental Stocking in Southern Ontario Populations of Lake Trout

(2009) Michael A. Halbisen et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources