The Accumulation of Deleterious Mutations as a Consequence of Domestication and Improvement in Sunflowers and Other Compositae Crops

No evidence that selection has been less effective at removing deleterious mutations in Europeans than in Africans

(2015) Ron Do et al.   NATURE GENETICS

Genome scans reveal candidate domestication and improvement genes in cultivated sunflower, as well as post-domestication introgression with wild relatives

(2015) Gregory J. Baute et al.   NEW PHYTOLOGIST

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

The deleterious mutation load is insensitive to recent population history

(2014) Yuval B Simons et al.   NATURE GENETICS

On the accumulation of deleterious mutations during range expansions

(2013) S. Peischl et al.   MOLECULAR ECOLOGY

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

(2013) Kathryn A. Hodgins et al.   Molecular Ecology Resources

Feeding the future

(2013) Susan McCouch et al.   NATURE

Genomic islands of divergence are not affected by geography of speciation in sunflowers

(2013) S. Renaut et al.   Nature Communications

The Pattern and Distribution of Deleterious Mutations in Maize

(2013) Sofiane Mezmouk et al.   G3-Genes Genomes Genetics

Advances in targeted genome editing

(2012) Pablo Perez-Pinera et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

(2012) Wenqing Fu et al.   NATURE

SIFT web server: predicting effects of amino acid substitutions on proteins

(2012) Ngak-Leng Sim et al.   NUCLEIC ACIDS RESEARCH

Large-scale transcriptome characterization and mass discovery of SNPs in globe artichoke and its related taxa

(2012) Davide Scaglione et al.   PLANT BIOTECHNOLOGY JOURNAL

Predicting the Functional Effect of Amino Acid Substitutions and Indels

(2012) Yongwook Choi et al.   PLoS One

Progress towards a reference genome for sunflower

(2011) N.C. Kane et al.   Botany

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Sunflower domestication alleles support single domestication center in eastern North America

(2011) B. K. Blackman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

A method and server for predicting damaging missense mutations

(2010) Ivan A Adzhubei et al.   NATURE METHODS

Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice

(2010) Torsten Günther et al.   THEORETICAL AND APPLIED GENETICS

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

COMPARATIVE GENOMIC AND POPULATION GENETIC ANALYSES INDICATE HIGHLY POROUS GENOMES AND HIGH LEVELS OF GENE FLOW BETWEEN DIVERGENTHELIANTHUSSPECIES

(2009) Nolan C. Kane et al.   EVOLUTION

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

Crop domestication in the Compositae: a family-wide trait assessment

(2008) Hannes Dempewolf et al.   GENETIC RESOURCES AND CROP EVOLUTION

Multiple Paleopolyploidizations during the Evolution of the Compositae Reveal Parallel Patterns of Duplicate Gene Retention after Millions of Years

(2008) M. S. Barker et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Legacy of Domestication: Accumulation of Deleterious Mutations in the Dog Genome

(2008) F. Cruz et al.   MOLECULAR BIOLOGY AND EVOLUTION

Proportionally more deleterious genetic variation in European than in African populations

(2008) Kirk E. Lohmueller et al.   NATURE

Genetics and evolution of weedyHelianthus annuuspopulations: adaptation of an agricultural weed

(2007) NOLAN C. KANE et al.   MOLECULAR ECOLOGY