Investigating genomic and phenotypic parallelism between piscivorous and planktivorous lake trout (Salvelinus namaycush) ecotypes by means of RADseq and morphometrics analyses

Shape plasticity in response to water velocity in the freshwater blennySalaria fluviatilis

(2016) M. Laporte et al.   JOURNAL OF FISH BIOLOGY

Controlling false discoveries in genome scans for selection

(2016) Olivier François et al.   MOLECULAR ECOLOGY

Local Adaptation by Alleles of Small Effect

(2015) Sam Yeaman   AMERICAN NATURALIST

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

If Arctic charrSalvelinus alpinusis ‘the most diverse vertebrate’, what is the lake charrSalvelinus namaycush?

(2015) Andrew Michael Muir et al.   FISH AND FISHERIES

Generation of a neutralFSTbaseline for testing local adaptation on gill raker number within and between European whitefish ecotypes in the Baltic Sea basin

(2015) M. Y. Ozerov et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

RAD sequencing reveals within-generation polygenic selection in response to anthropogenic organic and metal contamination in North Atlantic Eels

(2015) M. Laporte et al.   MOLECULAR ECOLOGY

Genetic rescue of small inbred populations: meta-analysis reveals large and consistent benefits of gene flow

(2015) Richard Frankham   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

RAD genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species, the American lobster (Homarus americanus)

(2015) Laura Benestan et al.   MOLECULAR ECOLOGY

Genetic rescue to the rescue

(2015) Andrew R. Whiteley et al.   TRENDS IN ECOLOGY & EVOLUTION

LEA: AnRpackage for landscape and ecological association studies

(2015) Eric Frichot et al.   Methods in Ecology and Evolution

RAD-QTL Mapping Reveals Both Genome-Level Parallelism and Different Genetic Architecture Underlying the Evolution of Body Shape in Lake Whitefish ( Coregonus clupeaformis ) Species Pairs

(2015) Martin Laporte et al.   G3-Genes Genomes Genetics

Evidence for genetic distinction among sympatric ecotypes of Arctic char (Salvelinus alpinus) in south-western Alaskan lakes

(2014) Shannan L. May-McNally et al.   ECOLOGY OF FRESHWATER FISH

Loss of genetic integrity in wild lake trout populations following stocking: insights from an exhaustive study of 72 lakes from Québec, Canada

(2014) Eliane Valiquette et al.   Evolutionary Applications

RNA-seq Reveals Transcriptomic Shock Involving Transposable Elements Reactivation in Hybrids of Young Lake Whitefish Species

(2014) Anne-Marie Dion-Côté et al.   MOLECULAR BIOLOGY AND EVOLUTION

Recent novel approaches for population genomics data analysis

(2014) Kimberly R. Andrews et al.   MOLECULAR ECOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

Cntnap4 differentially contributes to GABAergic and dopaminergic synaptic transmission

(2014) T. Karayannis et al.   NATURE

Atrial natriuretic peptide: An old hormone or a new cytokine?

(2014) Paolo De Vito   PEPTIDES

De novo SOX11 mutations cause Coffin–Siris syndrome

(2014) Yoshinori Tsurusaki et al.   Nature Communications

Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes

(2014) Kathryn R. Elmer et al.   Nature Communications

The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates

(2014) Camille Berthelot et al.   Nature Communications

Crater lake cichlids individually specialize along the benthic-limnetic axis

(2014) Henrik Kusche et al.   Ecology and Evolution

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

(2013) Pierre-Alexandre Gagnaire et al.   EVOLUTION

Robust Identification of Local Adaptation from Allele Frequencies

(2013) T. Gunther et al.   GENETICS

Adaptation and constraint in a stickleback radiation

(2013) K. L. Voje et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Testing for Associations between Loci and Environmental Gradients Using Latent Factor Mixed Models

(2013) Eric Frichot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Parallel and nonparallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon

(2013) Charles Perrier et al.   MOLECULAR ECOLOGY

Phylogeography and adaptation genetics of stickleback from the Haida Gwaii archipelago revealed using genome-wide single nucleotide polymorphism genotyping

(2013) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Genotyping-by-sequencing in ecological and conservation genomics

(2013) Shawn R. Narum et al.   MOLECULAR ECOLOGY

Ecological genomics of local adaptation

(2013) Outi Savolainen et al.   NATURE REVIEWS GENETICS

Sympatric Polymorphism in Lake Trout: The Coexistence of Multiple Shallow-Water Morphotypes in Great Bear Lake

(2013) Louise Chavarie et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Ecological speciation in postglacial European whitefish: rapid adaptive radiations into the littoral, pelagic, and profundal lake habitats

(2013) Kim Praebel et al.   Ecology and Evolution

Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr (Salvelinus fontinalis) populations

(2012) Fabien C. Lamaze et al.   Evolutionary Applications

Parallelism in the oxygen transport system of the lake whitefish: the role of physiological divergence in ecological speciation

(2012) MELISSA L. EVANS et al.   MOLECULAR ECOLOGY

Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis)

(2012) FABIEN C. LAMAZE et al.   MOLECULAR ECOLOGY

The genetic differentiation at quantitative trait loci under local adaptation

(2012) VALÉRIE LE CORRE et al.   MOLECULAR ECOLOGY

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Phosphorylation of Kif26b Promotes Its Polyubiquitination and Subsequent Proteasomal Degradation during Kidney Development

(2012) Takeshi Terabayashi et al.   PLoS One

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Lake charr Salvelinus namaycush spawning behaviour: new field observations and a review of current knowledge

(2012) A. M. Muir et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

A Perspective on Perspectives: Methods to Reduce Variation in Shape Analysis of Digital Images

(2012) A. M. Muir et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Reevaluating and Broadening the Definition of Genetic Rescue

(2011) Philip W. Hedrick et al.   CONSERVATION BIOLOGY

A Genome-wide SNP Genotyping Array Reveals Patterns of Global and Repeated Species-Pair Divergence in Sticklebacks

(2011) Felicity C. Jones et al.   CURRENT BIOLOGY

Genetic differentiation between the blue and the yellow phenotypes of walleye (Sander vitreus): An example of parallel evolution

(2011) Martin Laporte et al.   ECOSCIENCE

GLOBAL ANALYSIS OF GENES INVOLVED IN FRESHWATER ADAPTATION IN THREESPINE STICKLEBACKS (GASTEROSTEUS ACULEATUS)

(2011) Jacquelin DeFaveri et al.   EVOLUTION

CONVERGENCE, ADAPTATION, AND CONSTRAINT

(2011) Jonathan B. Losos   EVOLUTION

Genome-wide association studies establish that human intelligence is highly heritable and polygenic

(2011) G Davies et al.   MOLECULAR PSYCHIATRY

Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes

(2011) P. A. Hohenlohe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems

(2011) André E Minoche et al.   GENOME BIOLOGY

Is hatchery stocking a help or harm?

(2010) Hitoshi Araki et al.   AQUACULTURE

Classification of threespine stickleback along the benthic-limnetic axis

(2010) JAMES J. WILLACKER et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Genetic structure of freshwater Atlantic salmon (Salmo salar L.) populations from the lakes Onega and Ladoga of northwest Russia and implications for conservation

(2010) Mikhail Yu. Ozerov et al.   CONSERVATION GENETICS

The role of gill raker number variability in adaptive radiation of coregonid fish

(2010) Kimmo K. Kahilainen et al.   EVOLUTIONARY ECOLOGY

Using Environmental Correlations to Identify Loci Underlying Local Adaptation

(2010) G. Coop et al.   GENETICS

Population genetic inference from genomic sequence variation

(2010) J. E. Pool et al.   GENOME RESEARCH

An Integrative Model of Evolutionary Covariance: A Symposium on Body Shape in Fishes

(2010) J. A. Walker   INTEGRATIVE AND COMPARATIVE BIOLOGY

Phenotype-environment correlations in a putative whitefish adaptive radiation

(2010) Chris Harrod et al.   JOURNAL OF ANIMAL ECOLOGY

The transcriptomics of sympatric dwarf and normal lake whitefish (Coregonus clupeaformis spp., Salmonidae) divergence as revealed by next-generation sequencing

(2010) JULIE JEUKENS et al.   MOLECULAR ECOLOGY

Loss of genetic integrity correlates with stocking intensity in brook charr (Salvelinus fontinalis)

(2010) A. D. MARIE et al.   MOLECULAR ECOLOGY

MorphoJ: an integrated software package for geometric morphometrics

(2010) CHRISTIAN PETER KLINGENBERG   Molecular Ecology Resources

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genomics and the future of conservation genetics

(2010) Fred W. Allendorf et al.   NATURE REVIEWS GENETICS

Kif26b, a kinesin family gene, regulates adhesion of the embryonic kidney mesenchyme

(2010) Y. Uchiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ontogenetic niche shifts and resource partitioning of lake trout morphotypes

(2009) Mara S. Zimmerman et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

How well do evolutionary trees describe genetic relationships among populations?

(2009) S T Kalinowski   HEREDITY

ALX4 dysfunction disrupts craniofacial and epidermal development

(2009) Hulya Kayserili et al.   HUMAN MOLECULAR GENETICS

Augmented potassium current is a shared phenotype for two genetic defects associated with familial atrial fibrillation

(2009) Robert L. Abraham et al.   JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY

Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity

(2009) NADIA AUBIN-HORTH et al.   MOLECULAR ECOLOGY

The genetics of quantitative traits: challenges and prospects

(2009) Trudy F. C. Mackay et al.   NATURE REVIEWS GENETICS

Variable Introgression from Supplemental Stocking in Southern Ontario Populations of Lake Trout

(2009) Michael A. Halbisen et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Morphological variability among three geographically distinct Arctic charr (Salvelinus alpinusL.) populations reared in a common hatchery environment

(2008) M. Janhunen et al.   ECOLOGY OF FRESHWATER FISH

Charr truth: sympatric differentiation in Salvelinus species

(2008) David L. G. Noakes   ENVIRONMENTAL BIOLOGY OF FISHES

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonussp.)

(2008) J. ST-CYR et al.   MOLECULAR ECOLOGY