Multidimensional quantitative analysis of mRNA expression within intact vertebrate embryos

Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos

(2016) Sophie Petropoulos et al.   CELL

Mapping a multiplexed zoo of mRNA expression

(2016) Harry M. T. Choi et al.   DEVELOPMENT

Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing

(2016) Sheel Shah et al.   DEVELOPMENT

A Leukocyte Immune-Type Receptor Subset Is a Marker of Antiviral Cytotoxic Cells in Channel Catfish,Ictalurus punctatus

(2016) Erin B. Taylor et al.   JOURNAL OF IMMUNOLOGY

Multiplexed miRNA northern blots via hybridization chain reaction

(2016) Maayan Schwarzkopf et al.   NUCLEIC ACIDS RESEARCH

Affinity and dose of TCR engagement yield proportional enhancer and gene activity in CD4+ T cells

(2016) Karmel A Allison et al.   eLife

Transcriptome analysis of chicken ES, blastodermal and germ cells reveals that chick ES cells are equivalent to mouse ES cells rather than EpiSC

(2015) Christian Jean et al.   Stem Cell Research

Spatio-Temporal Differences in Dystrophin Dynamics at mRNA and Protein Levels Revealed by a Novel FlipTrap Line

(2015) Frederique Ruf-Zamojski et al.   PLoS One

Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability

(2014) Harry M. T. Choi et al.   ACS Nano

Transcription factors involved in retinogenesis are co-opted by the circadian clock following photoreceptor differentiation

(2014) R. Laranjeiro et al.   DEVELOPMENT

Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq

(2014) Barbara Treutlein et al.   NATURE

Multiplexed Digital mRNA Profiling of the Inflammatory Response in the West Nile Swiss Webster Mouse Model

(2014) José Peña et al.   PLoS Neglected Tropical Diseases

Patterning embryos with oscillations: structure, function and dynamics of the vertebrate segmentation clock

(2012) A. C. Oates et al.   DEVELOPMENT

Analysis of her1 and her7 Mutants Reveals a Spatio Temporal Separation of the Somite Clock Module

(2012) Suma Choorapoikayil et al.   PLoS One

Topology and Dynamics of the Zebrafish Segmentation Clock Core Circuit

(2012) Christian Schröter et al.   PLOS BIOLOGY

A versatile gene trap to visualize and interrogate the function of the vertebrate proteome

(2011) L. A. Trinh et al.   GENES & DEVELOPMENT

Programmable in situ amplification for multiplexed imaging of mRNA expression

(2010) Harry M T Choi et al.   NATURE BIOTECHNOLOGY

Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos

(2009) Richard Weiszmann et al.   Nature Protocols

Notch Is a Critical Component of the Mouse Somitogenesis Oscillator and Is Essential for the Formation of the Somites

(2009) Zoltan Ferjentsik et al.   PLoS Genetics

Control of segment number in vertebrate embryos

(2008) Céline Gomez et al.   NATURE

Imaging individual mRNA molecules using multiple singly labeled probes

(2008) Arjun Raj et al.   NATURE METHODS

An optimized procedure for whole-mount in situ hybridization on mouse embryos and embryoid bodies

(2008) Denis Piette et al.   Nature Protocols

High-resolution in situ hybridization to whole-mount zebrafish embryos

(2007) Christine Thisse et al.   Nature Protocols