The Antarctic sea ice alga Chlamydomonas sp. ICE-L provides insights into adaptive patterns of chloroplast evolution

Adaptive Patterns of Mitogenome Evolution Are Associated with the Loss of Shell Scutes in Turtles

(2017) Tibisay Escalona et al.   MOLECULAR BIOLOGY AND EVOLUTION

Acidophilic green algal genome provides insights into adaptation to an acidic environment

(2017) Shunsuke Hirooka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Acclimation of Antarctic Chlamydomonas to the sea-ice environment: a transcriptomic analysis

(2016) Chenlin Liu et al.   EXTREMOPHILES

Evolutionary Dynamics of Chloroplast Genomes in Low Light: A Case Study of the Endolithic Green AlgaOstreobium quekettii

(2016) Vanessa R. Marcelino et al.   Genome Biology and Evolution

Evolutionary Genetics of Hypoxia Tolerance in Cetaceans during Diving

(2016) Ran Tian et al.   Genome Biology and Evolution

Life at the boundary: photosynthesis at the soil–fluid interface. A synthesis focusing on mosses: Table 1.

(2016) John A. Raven et al.   JOURNAL OF EXPERIMENTAL BOTANY

Composition and regulation of thylakoid membrane of Antarctic ice microalgae Chlamydomonas sp. ICE-L in response to low-temperature environment stress

(2016) Wang Yi-Bin et al.   JOURNAL OF THE MARINE BIOLOGICAL ASSOCIATION OF THE UNITED KINGDOM

Chilling out: the evolution and diversification of psychrophilic algae with a focus on Chlamydomonadales

(2016) Marina Cvetkovska et al.   POLAR BIOLOGY

Chloroplast phylogenomic analysis of chlorophyte green algae identifies a novel lineage sister to the Sphaeropleales (Chlorophyceae)

(2015) Claude Lemieux et al.   BMC EVOLUTIONARY BIOLOGY

Evidence for Adaptation to the Tibetan Plateau Inferred from Tibetan Loach Transcriptomes

(2015) Ying Wang et al.   Genome Biology and Evolution

Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

(2015) G. W. C. Thomas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?

(2015) Zhengting Zou et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent evolution of the genomes of marine mammals

(2015) Andrew D Foote et al.   NATURE GENETICS

Convergent evolution of marine mammals is associated with distinct substitutions in common genes

(2015) Xuming Zhou et al.   Scientific Reports

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Erasing Errors due to Alignment Ambiguity When Estimating Positive Selection

(2014) Benjamin Redelings   MOLECULAR BIOLOGY AND EVOLUTION

Expression of fatty acid desaturase genes and fatty acid accumulation in Chlamydomonas sp. ICE-L under salt stress

(2013) Meiling An et al.   BIORESOURCE TECHNOLOGY

Review: the Antarctic Chlamydomonas raudensis: an emerging model for cold adaptation of photosynthesis

(2013) Jenna M. Dolhi et al.   EXTREMOPHILES

Phylotranscriptomics: Saturated Third Codon Positions Radically Influence the Estimation of Trees Based on Next-Gen Data

(2013) Jesse W. Breinholt et al.   Genome Biology and Evolution

A 20-state empirical amino-acid substitution model for green plant chloroplasts

(2013) Cymon J. Cox et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide signatures of convergent evolution in echolocating mammals

(2013) Joe Parker et al.   NATURE

Photosynthetic characteristics and UV stress tolerance of Antarctic seaweeds along the depth gradient

(2013) Pirjo Huovinen et al.   POLAR BIOLOGY

Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau

(2013) Yanhua Qu et al.   Nature Communications

Genomic insights into salt adaptation in a desert poplar

(2013) Tao Ma et al.   Nature Communications

A new Arctic Chlorella species for biodiesel production

(2012) Joon-Woo Ahn et al.   BIORESOURCE TECHNOLOGY

Cold-acclimation limits low temperature induced photoinhibition by promoting a higher photochemical quantum yield and a more effective PSII restoration in darkness in the Antarctic rather than the Andean ecotype of Colobanthus quitensis Kunt Bartl (Cariophyllaceae)

(2012) Luisa Bascuñán-Godoy et al.   BMC PLANT BIOLOGY

Cloning and expression analysis of two different LhcSR genes involved in stress adaptation in an Antarctic microalga, Chlamydomonas sp. ICE-L

(2012) Shanli Mou et al.   EXTREMOPHILES

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation

(2012) Guillaume Blanc et al.   GENOME BIOLOGY

ePlant and the 3D Data Display Initiative: Integrative Systems Biology on the World Wide Web

(2011) Geoffrey Fucile et al.   PLoS One

A structural phylogenetic map for chloroplast photosynthesis

(2011) John F. Allen et al.   TRENDS IN PLANT SCIENCE

The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection

(2010) W. Fletcher et al.   MOLECULAR BIOLOGY AND EVOLUTION

Photoinhibition of photosystem I

(2010) Kintake Sonoike   PHYSIOLOGIA PLANTARUM

Antenna complexes protect Photosystem I from Photoinhibition

(2009) Alessandro Alboresi et al.   BMC PLANT BIOLOGY

EVOLUTIONARY ORIGIN OF GLOEOMONAS (VOLVOCALES, CHLOROPHYCEAE), BASED ON ULTRASTRUCTURE OF CHLOROPLASTS AND MOLECULAR PHYLOGENY1

(2009) Hisayoshi Nozaki et al.   JOURNAL OF PHYCOLOGY

Protein structure prediction on the Web: a case study using the Phyre server

(2009) Lawrence A Kelley et al.   Nature Protocols

Photosynthetic response of salt-tolerant and sensitive soybean varieties

(2009) K. X. Lu et al.   PHOTOSYNTHETICA

Evaluation of time profile reconstruction from complex two-color microarray designs

(2008) Ana C Fierro et al.   BMC BIOINFORMATICS

Epiphytic bacteria on the Antarctic ice diatom Amphiprora kufferathii Manguin cleave hydrogen peroxide produced during algal photosynthesis

(2008) M. Hünken et al.   PLANT BIOLOGY