Evolutionary Dynamics of Chloroplast Genomes in Low Light: A Case Study of the Endolithic Green AlgaOstreobium quekettii

Taxonomic revision of Halimeda (Bryopsidales, Chlorophyta) in south-western Australia

(2016) Ma. Chiela M. Cremen et al.   AUSTRALIAN SYSTEMATIC BOTANY

Life at the boundary: photosynthesis at the soil–fluid interface. A synthesis focusing on mosses: Table 1.

(2016) John A. Raven et al.   JOURNAL OF EXPERIMENTAL BOTANY

The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea

(2016) Jeanine L. Olsen et al.   NATURE

Multi-marker metabarcoding of coral skeletons reveals a rich microbiome and diverse evolutionary origins of endolithic algae

(2016) Vanessa Rossetto Marcelino et al.   Scientific Reports

A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA

(2016) Thomas Sauvage et al.   BMC ECOLOGY

Chloroplast phylogenomic analyses reveal the deepest-branching lineage of the Chlorophyta, Palmophyllophyceae class. nov.

(2016) Frederik Leliaert et al.   Scientific Reports

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin

(2015) Frederik Leliaert et al.   BMC GENOMICS

Auxenochlorella protothecoides and Prototheca wickerhamii plastid genome sequences give insight into the origins of non-photosynthetic algae

(2015) Dong Yan et al.   Scientific Reports

Nitrogen limitation as a driver of genome size evolution in a group of karst plants

(2015) Ming Kang et al.   Scientific Reports

Origin of marine planktonic cyanobacteria

(2015) Patricia Sánchez-Baracaldo   Scientific Reports

Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species

(2014) Claude Lemieux et al.   BMC GENOMICS

Two New Fern Chloroplasts and Decelerated Evolution Linked to the Long Generation Time in Tree Ferns

(2014) B. Zhong et al.   Genome Biology and Evolution

Changes in DNA damage, molecular integrity, and copy number for plastid DNA and mitochondrial DNA during maize development

(2014) Rachana A. Kumar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome reduction as the dominant mode of evolution

(2013) Yuri I. Wolf et al.   BIOESSAYS

Energy and spatial order in niche and community

(2013) Shane D. Wright et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

The Branch-Site Test of Positive Selection Is Surprisingly Robust but Lacks Power under Synonymous Substitution Saturation and Variation in GC

(2013) Walid H. Gharib et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactions of photosynthesis with genome size and function

(2013) J. A. Raven et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family

(2013) S. Wicke et al.   PLANT CELL

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Microbial Lifestyle and Genome Signatures

(2012)   CURRENT GENOMICS

Phosphorus and nitrogen effects on microbial euendolithic communities and their bioerosion rates

(2012) M. Carreiro-Silva et al.   MARINE POLLUTION BULLETIN

Global Gradients in Vertebrate Diversity Predicted by Historical Area-Productivity Dynamics and Contemporary Environment

(2012) Walter Jetz et al.   PLOS BIOLOGY

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits

(2011) John Larsson et al.   BMC EVOLUTIONARY BIOLOGY

A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection

(2011) Sergei L. Kosakovsky Pond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The genome as a life-history character: why rate of molecular evolution varies between mammal species

(2011) L. Bromham   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Expanding the solar spectrum used by photosynthesis

(2011) Min Chen et al.   TRENDS IN PLANT SCIENCE

DNA repair in organelles: Pathways, organization, regulation, relevance in disease and aging

(2010) Pierre Boesch et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus

(2010) Sandip Paul et al.   BMC GENOMICS

Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition

(2010) James J. Elser et al.   TRENDS IN ECOLOGY & EVOLUTION

Variability in thermal and UV-B energy fluxes through time and their influence on plant diversity and speciation

(2009) K. J. Willis et al.   JOURNAL OF BIOGEOGRAPHY

ANALYSIS OF A PLASTID MULTIGENE DATA SET AND THE PHYLOGENETIC POSITION OF THE MARINE MACROALGACAULERPA FILIFORMIS(CHLOROPHYTA)

(2009) G. C. Zuccarello et al.   JOURNAL OF PHYCOLOGY

Ecological Nitrogen Limitation Shapes the DNA Composition of Plant Genomes

(2009) C. Acquisti et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution of reduced and compact chloroplast genomes (cpDNAs) in gnetophytes: Selection toward a lower-cost strategy

(2009) Chung-Shien Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Record of microendoliths in different facies of the Upper Ordovician in the Cincinnati Arch region USA: The early history of light-related microendolithic zonation

(2009) Klaus Vogel et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Genome streamlining and the elemental costs of growth

(2009) Dag O. Hessen et al.   TRENDS IN ECOLOGY & EVOLUTION

IMAGING OF OXYGEN DYNAMICS WITHIN THE ENDOLITHIC ALGAL COMMUNITY OF THE MASSIVE CORALPORITES LOBATA

(2008) Michael Kühl et al.   JOURNAL OF PHYCOLOGY

Clues about the Genetic Basis of Adaptation Emerge from Comparing the Proteomes of Two Ostreococcus Ecotypes (Chlorophyta, Prasinophyceae)

(2008) S. Jancek et al.   MOLECULAR BIOLOGY AND EVOLUTION

Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina

(2008) W. D. Swingley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA