A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia

Knowledge about the presence or absence of miRNA isoforms (isomiRs) can successfully discriminate amongst 32 TCGA cancer types

(2017) Aristeidis G. Telonis et al.   NUCLEIC ACIDS RESEARCH

Differential expressions of cancer-associated genes and their regulatory miRNAs in colorectal carcinoma

(2015) Murat Kara et al.   GENE

Beyond the one-locus-one-miRNA paradigm: microRNA isoforms enable deeper insights into breast cancer heterogeneity

(2015) Aristeidis G. Telonis et al.   NUCLEIC ACIDS RESEARCH

microRNA-200b and microRNA-200c promote colorectal cancer cell proliferation via targeting the reversion-inducing cysteine-rich protein with Kazal motifs

(2015) Yi Pan et al.   RNA Biology

Bias in Ligation-Based Small RNA Sequencing Library Construction Is Determined by Adaptor and RNA Structure

(2015) Ryan T. Fuchs et al.   PLoS One

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

(2014) Zhifu Sun et al.   BMC GENOMICS

MicroRNA-7expression in colorectal cancer is associated with poor prognosis and regulates cetuximab sensitivity viaEGFRregulation

(2014) Toshinaga Suto et al.   CARCINOGENESIS

Identification of microRNA-135b in Stool as a Potential Noninvasive Biomarker for Colorectal Cancer and Adenoma

(2014) C. W. Wu et al.   CLINICAL CANCER RESEARCH

Enhanced miR-182 transcription is a predictor of poor overall survival in colorectal adenocarcinoma patients

(2014) Stamatia-Maria Rapti et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research

(2014) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

3′ IsomiR Species and DNA Contamination Influence Reliable Quantification of MicroRNAs by Stem-Loop Quantitative PCR

(2014) Anita Schamberger et al.   PLoS One

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease

(2014) J. Boele et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of microRNA-183 in human colorectal cancer and its clinical significance

(2013) Tong Zhou et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

Up-regulation of miR-182 expression in colorectal cancer tissues and its prognostic value

(2013) Hui Liu et al.   INTERNATIONAL JOURNAL OF COLORECTAL DISEASE

miRspring: a compact standalone research tool for analyzing miRNA-seq data

(2013) David T. Humphreys et al.   NUCLEIC ACIDS RESEARCH

Multi-Platform Analysis of MicroRNA Expression Measurements in RNA from Fresh Frozen and FFPE Tissues

(2013) Christopher P. Kolbert et al.   PLoS One

Deep Sequencing the MicroRNA Transcriptome in Colorectal Cancer

(2013) Kristina Schee et al.   PLoS One

Mono-Uridylation of Pre-MicroRNA as a Key Step in the Biogenesis of Group II let-7 MicroRNAs

(2012) Inha Heo et al.   CELL

Circulating U2 small nuclear RNA fragments as a novel diagnostic biomarker for pancreatic and colorectal adenocarcinoma

(2012) Alexander Baraniskin et al.   INTERNATIONAL JOURNAL OF CANCER

YM500: a small RNA sequencing (smRNA-seq) database for microRNA research

(2012) Wei-Chung Cheng et al.   NUCLEIC ACIDS RESEARCH

Structural bias in T4 RNA ligase-mediated 3′-adapter ligation

(2012) Fanglei Zhuang et al.   NUCLEIC ACIDS RESEARCH

IsomiRs – the overlooked repertoire in the dynamic microRNAome

(2012) Corine T. Neilsen et al.   TRENDS IN GENETICS

Global cancer statistics

(2011) Ahmedin Jemal et al.   CA-A CANCER JOURNAL FOR CLINICIANS

Detection of miR-92a and miR-21 in stool samples as potential screening biomarkers for colorectal cancer and polyps

(2011) Chung Wah Wu et al.   GUT

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Common and distinct patterns of terminal modifications to mirtrons and canonical microRNAs

(2011) J. O. Westholm et al.   RNA

MicroRNAs and their isomiRs function cooperatively to target common biological pathways

(2011) Nicole Cloonan et al.   GENOME BIOLOGY

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

(2010) H. R. Chiang et al.   GENES & DEVELOPMENT

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

The widespread regulation of microRNA biogenesis, function and decay

(2010) Jacek Krol et al.   NATURE REVIEWS GENETICS

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2

(2009) T. Katoh et al.   GENES & DEVELOPMENT

MicroRNA Expression Profiles Associated With Prognosis and Therapeutic Outcome in Colon Adenocarcinoma

(2008) Aaron J. Schetter et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing

(2008) A. Azuma-Mukai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptome content and dynamics at single-nucleotide resolution

(2008) Nicole Cloonan et al.   GENOME BIOLOGY