YM500: a small RNA sequencing (smRNA-seq) database for microRNA research
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Title
YM500: a small RNA sequencing (smRNA-seq) database for microRNA research
Authors
Keywords
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Journal
NUCLEIC ACIDS RESEARCH
Volume 41, Issue D1, Pages D285-D294
Publisher
Oxford University Press (OUP)
Online
2012-12-01
DOI
10.1093/nar/gks1238
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Note: Only part of the references are listed.- miRNA arm selection and isomiR distribution in gastric cancer
- (2012) Sung-Chou Li et al. BMC GENOMICS
- Clinical significance of miR-144-ZFX axis in disseminated tumour cells in bone marrow in gastric cancer cases
- (2012) S Akiyoshi et al. BRITISH JOURNAL OF CANCER
- The Rectal Cancer microRNAome - microRNA Expression in Rectal Cancer and Matched Normal Mucosa
- (2012) J. Gaedcke et al. CLINICAL CANCER RESEARCH
- Adenosine deaminases that act on RNA induce reproducible changes in abundance and sequence of embryonic miRNAs
- (2012) C. Vesely et al. GENOME RESEARCH
- A-to-I editing of microRNAs in the mammalian brain increases during development
- (2012) Y. Ekdahl et al. GENOME RESEARCH
- Systematic identification of edited microRNAs in the human brain
- (2012) S. Alon et al. GENOME RESEARCH
- Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells
- (2012) Jasenka Guduric-Fuchs et al. JOURNAL OF CELLULAR BIOCHEMISTRY
- Diagnostic role of microRNA expression profile in the serum of pregnant women with fetuses with neural tube defects
- (2012) Hui Gu et al. JOURNAL OF NEUROCHEMISTRY
- Consistent isomiR expression patterns and 3′ addition events in miRNA gene clusters and families implicate functional and evolutionary relationships
- (2012) Li Guo et al. MOLECULAR BIOLOGY REPORTS
- Deep annotation of mouse iso-miR and iso-moR variation
- (2012) Hongjun Zhou et al. NUCLEIC ACIDS RESEARCH
- Performance comparison and evaluation of software tools for microRNA deep-sequencing data analysis
- (2012) Yue Li et al. NUCLEIC ACIDS RESEARCH
- Complexity of Murine Cardiomyocyte miRNA Biogenesis, Sequence Variant Expression and Function
- (2012) David T. Humphreys et al. PLoS One
- Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs
- (2012) C. Voellenkle et al. RNA
- Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue
- (2012) Leopold Parts et al. PLoS Genetics
- High levels of RNA-editing site conservation amongst 15 laboratory mouse strains
- (2012) Petr Daneck et al. GENOME BIOLOGY
- The Exoribonuclease Nibbler Controls 3′ End Processing of MicroRNAs in Drosophila
- (2011) Nan Liu et al. CURRENT BIOLOGY
- The 3′-to-5′ Exoribonuclease Nibbler Shapes the 3′ Ends of MicroRNAs Bound to Drosophila Argonaute1
- (2011) Bo W. Han et al. CURRENT BIOLOGY
- MicroRNA evolution by arm switching
- (2011) Sam Griffiths-Jones et al. EMBO REPORTS
- Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity
- (2011) S. K. Wyman et al. GENOME RESEARCH
- Interrogation of rabbit miRNAs and their isomiRs
- (2011) Sung-Chou Li et al. GENOMICS
- Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis
- (2011) Ruslan Kalendar et al. GENOMICS
- Small RNA transcriptome investigation based on next-generation sequencing technology
- (2011) Linglin Zhou et al. Journal of Genetics and Genomics
- pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5′/3′ arm variation including concomitant cleavage and polyuridylation patterns
- (2011) A. Maxwell Burroughs et al. NUCLEIC ACIDS RESEARCH
- miRanalyzer: an update on the detection and analysis of microRNAs in high-throughput sequencing experiments
- (2011) M. Hackenberg et al. NUCLEIC ACIDS RESEARCH
- NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
- (2011) K. D. Pruitt et al. NUCLEIC ACIDS RESEARCH
- miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
- (2011) Marc R. Friedländer et al. NUCLEIC ACIDS RESEARCH
- Deep sequencing of microRNA precursors reveals extensive 3' end modification
- (2011) M. A. Newman et al. RNA
- MicroRNAs and their isomiRs function cooperatively to target common biological pathways
- (2011) Nicole Cloonan et al. GENOME BIOLOGY
- miRNAkey: a software for microRNA deep sequencing analysis
- (2010) Roy Ronen et al. BIOINFORMATICS
- MIReNA: finding microRNAs with high accuracy and no learning at genome scale and from deep sequencing data
- (2010) Anthony Mathelier et al. BIOINFORMATICS
- A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness
- (2010) A. M. Burroughs et al. GENOME RESEARCH
- DSAP: deep-sequencing small RNA analysis pipeline
- (2010) Po-Jung Huang et al. NUCLEIC ACIDS RESEARCH
- mirTools: microRNA profiling and discovery based on high-throughput sequencing
- (2010) Erle Zhu et al. NUCLEIC ACIDS RESEARCH
- Rfam: Wikipedia, clans and the "decimal" release
- (2010) P. P. Gardner et al. NUCLEIC ACIDS RESEARCH
- ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments
- (2010) H. Parkinson et al. NUCLEIC ACIDS RESEARCH
- NCBI GEO: archive for functional genomics data sets--10 years on
- (2010) T. Barrett et al. NUCLEIC ACIDS RESEARCH
- miRBase: integrating microRNA annotation and deep-sequencing data
- (2010) A. Kozomara et al. NUCLEIC ACIDS RESEARCH
- Complexity of the microRNA repertoire revealed by next-generation sequencing
- (2010) L. W. Lee et al. RNA
- miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
- (2010) David Hendrix et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression
- (2009) Wei-Chi Wang et al. BMC BIOINFORMATICS
- Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2
- (2009) T. Katoh et al. GENES & DEVELOPMENT
- Zcchc11-dependent uridylation of microRNA directs cytokine expression
- (2009) Matthew R. Jones et al. NATURE CELL BIOLOGY
- SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells
- (2009) Lorena Pantano et al. NUCLEIC ACIDS RESEARCH
- Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications
- (2009) H. Alexander Ebhardt et al. NUCLEIC ACIDS RESEARCH
- deepBase: a database for deeply annotating and mining deep sequencing data
- (2009) Jian-Hua Yang et al. NUCLEIC ACIDS RESEARCH
- Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
- (2009) Xi Chen et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
- (2008) J. G. Reid et al. GENOME RESEARCH
- Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
- (2008) R. D. Morin et al. GENOME RESEARCH
- Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
- (2008) Andrew Grimson et al. NATURE
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