Transcriptional profiling of swine mammary gland during the transition from colostrogenesis to lactogenesis using RNA sequencing

ACSL1, AGPAT6, FABP3, LPIN1, and SLC27A6 Are the Most Abundant Isoforms in Bovine Mammary Tissue and Their Expression Is Affected by Stage of Lactation

(2018) Massimo Bionaz et al.   JOURNAL OF NUTRITION

Impact of fat source and dietary fibers on feed intake, plasma metabolites, litter gain and the yield and composition of milk in sows

(2016) U. Krogh et al.   Animal

RNA-Sequencing for profiling goat milk transcriptome in colostrum and mature milk

(2016) Alessandra Crisà et al.   BMC Veterinary Research

XBP1 Regulates the Biosynthetic Capacity of the Mammary Gland During Lactation by Controlling Epithelial Expansion and Endoplasmic Reticulum Formation

(2016) Kristen R. Davis et al.   ENDOCRINOLOGY

Body condition score and plane of nutrition prepartum affect adipose tissue transcriptome regulators of metabolism and inflammation in grazing dairy cows during the transition period

(2016) M. Vailati-Riboni et al.   JOURNAL OF DAIRY SCIENCE

Biosynthesis of milk fat, protein, and lactose: roles of transcriptional and posttranscriptional regulation

(2016) Johan S. Osorio et al.   PHYSIOLOGICAL GENOMICS

Human Milk Components Modulate Toll-Like Receptor–Mediated Inflammation

(2016) YingYing He et al.   Advances in Nutrition

Amino acids and mammary gland development: nutritional implications for milk production and neonatal growth

(2016) Reza Rezaei et al.   Journal of Animal Science and Biotechnology

Comprehensive RNA-Seq profiling to evaluate lactating sheep mammary gland transcriptome

(2016) Aroa Suárez-Vega et al.   Scientific Data

The XBP1 Arm of the Unfolded Protein Response Induces Fibrogenic Activity in Hepatic Stellate Cells Through Autophagy

(2016) Rosa S. Kim et al.   Scientific Reports

Transcriptome analysis of the mammary gland from GH transgenic goats during involution

(2015) Jian Lin et al.   GENE

Leucine and histidine independently regulate milk protein synthesis in bovine mammary epithelial cells via mTOR signaling pathway

(2015) Hai-na Gao et al.   Journal of Zhejiang University-SCIENCE B

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Veterinary Medicine and Omics (Veterinomics): Metabolic Transition of Milk Triacylglycerol Synthesis in Sows from Late Pregnancy to Lactation

(2015) Yantao Lv et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Bovine Milk Proteome in the First 9 Days: Protein Interactions in Maturation of the Immune and Digestive System of the Newborn

(2015) Lina Zhang et al.   PLoS One

Placental accommodations for transport and metabolism during intra-uterine crowding in pigs

(2015) Jeffrey L Vallet et al.   Journal of Animal Science and Biotechnology

Neonatal piglet survival: impact of sow nutrition around parturition on fetal glycogen deposition and production and composition of colostrum and transient milk

(2014) P. K. Theil et al.   Animal

Genetic variations in theSPP1promoter affect gene expression and the level of osteopontin secretion into bovine milk

(2014) P. L. Dudemaine et al.   ANIMAL GENETICS

Mechanistic model to predict colostrum intake based on deuterium oxide dilution technique data and impact of gestation and prefarrowing diets on piglet intake and sow yield of colostrum1

(2014) P. K. Theil et al.   JOURNAL OF ANIMAL SCIENCE

Cholesterol metabolism, transport, and hepatic regulation in dairy cows during transition and early lactation

(2014) E.C. Kessler et al.   JOURNAL OF DAIRY SCIENCE

Transcriptomic analysis reveals key regulators of mammogenesis and the pregnancy-lactation cycle

(2014) YuanYuan Zhou et al.   Science China-Life Sciences

The coagulation system and its function in early immune defense

(2014) Tom van der Poll et al.   THROMBOSIS AND HAEMOSTASIS

TP53 supports basal-like differentiation of mammary epithelial cells by preventing translocation of deltaNp63 into nucleoli

(2014) Pauliina M. Munne et al.   Scientific Reports

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Regulation of lipid synthesis genes and milk fat production in human mammary epithelial cells during secretory activation

(2013) Mahmoud A. Mohammad et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

Mice Heterozygous for the Xanthine Oxidoreductase Gene Facilitate Lipid Accumulation in Adipocytes

(2013) Noboru Murakami et al.   ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY

The Functional and Molecular Entities Underlying Amino Acid and Peptide Transport By the Mammary Gland Under Different Physiological And Pathological Conditions

(2013) D. B. Shennan et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

Bovine Mammary Gene Expression Profiling during the Onset of Lactation

(2013) Yuanyuan Gao et al.   PLoS One

Lipin-1 and lipin-3 together determine adiposity in vivo

(2013) Lauren S. Csaki et al.   Molecular Metabolism

Gene regulation of UDP-galactose synthesis and transport: potential rate-limiting processes in initiation of milk production in humans

(2012) Mahmoud A. Mohammad et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

The Unfolded Protein Response in Secretory Cell Function

(2012) Kristin A. Moore et al.   Annual Review of Genetics

Transcriptional profiling of bovine milk using RNA sequencing

(2012) Saumya Wickramasinghe et al.   BMC GENOMICS

Review: Mammary development in swine: effects of hormonal status, nutrition and management

(2012) C. Farmer   CANADIAN JOURNAL OF ANIMAL SCIENCE

IRE1α-XBP1s Induces PDI Expression to Increase MTP Activity for Hepatic VLDL Assembly and Lipid Homeostasis

(2012) Shiyu Wang et al.   Cell Metabolism

The unfolded protein response: controlling cell fate decisions under ER stress and beyond

(2012) Claudio Hetz   NATURE REVIEWS MOLECULAR CELL BIOLOGY

A Novel Dynamic Impact Approach (DIA) for Functional Analysis of Time-Course Omics Studies: Validation Using the Bovine Mammary Transcriptome

(2012) Massimo Bionaz et al.   PLoS One

Mouse lipin-1 and lipin-2 cooperate to maintain glycerolipid homeostasis in liver and aging cerebellum

(2012) J. R. Dwyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

In-depth analysis of low abundant proteins in bovine colostrum using different fractionation techniques

(2012) Asger Nissen et al.   PROTEOMICS

IRF7: activation, regulation, modification and function

(2011) S Ning et al.   GENES AND IMMUNITY

Transcript abundance of amino acid transporters, β-casein, and α-lactalbumin in mammary tissue of periparturient, lactating, and postweaned sows

(2011) R. Manjarin et al.   JOURNAL OF DAIRY SCIENCE

Transfer of maternal haptoglobin to suckling piglets

(2011) Stephanie Hiss-Pesch et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Perspectives on Immunoglobulins in Colostrum and Milk

(2011) Walter L. Hurley et al.   Nutrients

Comparative Approach of the de novo Fatty Acid Synthesis (Lipogenesis) between Ruminant and Non Ruminant Mammalian Species: From Biochemical Level to the Main Regulatory Lipogenic Genes

(2010) G.P. Laliotis et al.   CURRENT GENOMICS

mRNA abundance and expression of SLC27A, ACC, SCD, FADS, LPIN, INSIG, and PPARGC1 gene isoforms in mouse mammary glands during the lactation cycle

(2010) L.Q. Han et al.   GENETICS AND MOLECULAR RESEARCH

Lipopolysaccharide-binding protein-mediated Toll-like receptor 4 dimerization enables rapid signal transduction against lipopolysaccharide stimulation on membrane-associated CD14-expressing cells

(2010) H. Tsukamoto et al.   INTERNATIONAL IMMUNOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Biochemistry, physiology, and genetics of GPAT, AGPAT, and lipin enzymes in triglyceride synthesis

(2009) Kazuharu Takeuchi et al.   AMERICAN JOURNAL OF PHYSIOLOGY-ENDOCRINOLOGY AND METABOLISM

A functional genomics approach to evaluate candidate genes located in a QTL interval for milk production traits on BTA6

(2009) P. A. Sheehy et al.   ANIMAL GENETICS

Osteopontin: an early innate immune marker of Escherichia coli mastitis harbors genetic polymorphisms with possible links with resistance to mastitis

(2009) Karin Alain et al.   BMC GENOMICS

Identification in milk of a serum amyloid A peptide chemoattractant for B lymphoblasts

(2009) Berardo de Jesus Rodriguez et al.   BMC IMMUNOLOGY

Blinded by the Light: The Growing Complexity of p53

(2009) Karen H. Vousden et al.   CELL

The small chromatin-binding protein p8 coordinates the association of anti-proliferative and pro-myogenic proteins at the myogenin promoter

(2009) R. Sambasivan et al.   JOURNAL OF CELL SCIENCE

Peroxisome proliferator-activated receptor-γ activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents

(2009) A.K.G. Kadegowda et al.   JOURNAL OF DAIRY SCIENCE

Gene networks driving bovine milk fat synthesis during the lactation cycle

(2008) Massimo Bionaz et al.   BMC GENOMICS

Immune components of bovine colostrum and milk1

(2008) K. Stelwagen et al.   JOURNAL OF ANIMAL SCIENCE

Internal Controls for Quantitative Polymerase Chain Reaction of Swine Mammary Glands During Pregnancy and Lactation

(2008) S. Tramontana et al.   JOURNAL OF DAIRY SCIENCE

Identification of a novelsn-glycerol-3-phosphate acyltransferase isoform, GPAT4, as the enzyme deficient inAgpat6−/−mice

(2008) Cynthia A. Nagle et al.   JOURNAL OF LIPID RESEARCH

Membrane phospholipid synthesis and endoplasmic reticulum function

(2008) Paolo Fagone et al.   JOURNAL OF LIPID RESEARCH

Genetic Variants of the FADS1 FADS2 Gene Cluster Are Associated with Altered (n-6) and (n-3) Essential Fatty Acids in Plasma and Erythrocyte Phospholipids in Women during Pregnancy and in Breast Milk during Lactation

(2008) Lin Xie et al.   JOURNAL OF NUTRITION

The chemokine CXCL3 is responsible for the constitutive chemotactic activity of bovine milk for neutrophils

(2008) Pascal Rainard et al.   MOLECULAR IMMUNOLOGY

Regulation of Hepatic Lipogenesis by the Transcription Factor XBP1

(2008) A.-H. Lee et al.   SCIENCE

Neutrophils as one of the major haptoglobin sources in mastitis affected milk

(2008) I-Hsiang Lai et al.   VETERINARY RESEARCH