Elucidation of cross-species proteomic effects in human and hominin bone proteome identification through a bioinformatics experiment

Intra- and Interskeletal Proteome Variations in Fresh and Buried Bones

(2017) Noemi Procopio et al.   JOURNAL OF PROTEOME RESEARCH

Expansion for the Brachylophosaurus canadensis Collagen I Sequence and Additional Evidence of the Preservation of Cretaceous Protein

(2017) Elena R. Schroeter et al.   JOURNAL OF PROTEOME RESEARCH

Comparing ancient DNA survival and proteome content in 69 archaeological cattle tooth and bone samples from multiple European sites

(2017) Caroline Wadsworth et al.   Journal of Proteomics

A mitogenomic timetree for Darwin’s enigmatic South American mammal Macrauchenia patachonica

(2017) Michael Westbury et al.   Nature Communications

Middle Pleistocene protein sequences from the rhinoceros genusStephanorhinusand the phylogeny of extant and extinct Middle/Late Pleistocene Rhinocerotidae

(2017) Frido Welker et al.   PeerJ

Proteomic profiling of archaeological human bone

(2017) Rikai Sawafuji et al.   Royal Society Open Science

Metaproteomic data analysis at a glance: advances in computational microbial community proteomics

(2016) Thilo Muth et al.   Expert Review of Proteomics

The challenge of identifying tuberculosis proteins in archaeological tissues

(2016) Jessica Hendy et al.   JOURNAL OF ARCHAEOLOGICAL SCIENCE

Cross-species proteomics in analysis of mammalian sperm proteins

(2016) Helen L. Bayram et al.   Journal of Proteomics

Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne

(2016) Frido Welker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Peptide sequences from the firstCastoroides ohioensisskull and the utility of old museum collections for palaeoproteomics

(2016) Timothy P. Cleland et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Protein sequences bound to mineral surfaces persist into deep time

(2016) Beatrice Demarchi et al.   eLife

Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis

(2016) Samantha Brown et al.   Scientific Reports

Mass Spectrometry and Antibody-Based Characterization of Blood Vessels from Brachylophosaurus canadensis

(2015) Timothy P. Cleland et al.   JOURNAL OF PROTEOME RESEARCH

Novor: Real-Time Peptide de Novo Sequencing Software

(2015) Bin Ma   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Ancient proteins resolve the evolutionary history of Darwin’s South American ungulates

(2015) Frido Welker et al.   NATURE

The BioMart community portal: an innovative alternative to large, centralized data repositories

(2015) Damian Smedley et al.   NUCLEIC ACIDS RESEARCH

Biologically and diagenetically derived peptide modifications in moa collagens

(2015) T. P. Cleland et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Ancient collagen reveals evolutionary history of the endemic South American 'ungulates'

(2015) M. Buckley   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Correction: Collagen Sequence Analysis of the Extinct Giant Ground Sloths Lestodon and Megatherium

(2015) Michael Buckley et al.   PLoS One

Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes

(2014) Luca Pozzi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pathogens and host immunity in the ancient human oral cavity

(2014) Christina Warinner et al.   NATURE GENETICS

Proteome degradation in ancient bone: Diagenesis and phylogenetic potential

(2014) M. Buckley et al.   PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY

Patterns of coding variation in the complete exomes of three Neandertals

(2014) S. Castellano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome degradation in fossils: investigating the longevity of protein survival in ancient bone

(2014) Caroline Wadsworth et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Unlocking Ancient Protein Palimpsests

(2014) E. Cappellini et al.   SCIENCE

Direct evidence of milk consumption from ancient human dental calculus

(2014) C. Warinner et al.   Scientific Reports

Proteomic analysis of human dental cementum and alveolar bone

(2013) Cristiane R. Salmon et al.   Journal of Proteomics

Proteomics identifies the composition and manufacturing recipe of the 2500-year old sourdough bread from Subeixi cemetery in China

(2013) Anna Shevchenko et al.   Journal of Proteomics

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

(2013) Ludovic Orlando et al.   NATURE

A Mitogenomic Phylogeny of Living Primates

(2013) Knut Finstermeier et al.   PLoS One

Mid-Pliocene warm-period deposits in the High Arctic yield insight into camel evolution

(2013) Natalia Rybczynski et al.   Nature Communications

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

A High-Coverage Genome Sequence from an Archaic Denisovan Individual

(2012) M. Meyer et al.   SCIENCE

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

(2011) Enrico Cappellini et al.   JOURNAL OF PROTEOME RESEARCH

PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

(2011) Jing Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

(2010) Richard D. Wilkinson et al.   SYSTEMATIC BIOLOGY

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY