SACCHARIS: an automated pipeline to streamline discovery of carbohydrate active enzyme activities within polyspecific families and de novo sequence datasets

Polysaccharide Utilization Loci: Fueling Microbial Communities

(2017) Julie M. Grondin et al.   JOURNAL OF BACTERIOLOGY

Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates

(2017) Darryl R. Jones et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

(2016) Keith Mewis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ancestral protein reconstruction: techniques and applications

(2016) Rainer Merkl et al.   BIOLOGICAL CHEMISTRY

Unraveling the multivalent binding of a marine family 6 carbohydrate-binding module with its native laminarin ligand

(2016) Murielle Jam et al.   FEBS Journal

The Mechanism by Which Arabinoxylanases Can Recognize Highly Decorated Xylans

(2016) Aurore Labourel et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Biocatalysts for biomass deconstruction from environmental genomics

(2015) Zachary Armstrong et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2

(2015) Richard McLean et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism

(2015) Fiona Cuskin et al.   NATURE

The Transporter Classification Database (TCDB): recent advances

(2015) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Twenty years of theMEROPSdatabase of proteolytic enzymes, their substrates and inhibitors

(2015) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

High-resolution crystal structure of a polyextreme GH43 glycosidase fromHalothermothrix oreniiwith α-L-arabinofuranosidase activity

(2015) Noor Hassan et al.   Acta Crystallographica Section F-Structural Biology Communications

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

(2014) Nicolas Terrapon et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Using structure to inform carbohydrate binding module function

(2014) D Wade Abbott et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes

(2014) Johan Larsbrink et al.   NATURE

Comparative Variation within the Genome of Campylobacter jejuni NCTC 11168 in Human and Murine Hosts

(2014) Dallas K. Thomas et al.   PLoS One

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Mining for hemicellulases in the fungus-growing termite Pseudacanthotermes militaris using functional metagenomics

(2013) Géraldine Bastien et al.   Biotechnology for Biofuels

Advances in understanding the molecular basis of plant cell wall polysaccharide recognition by carbohydrate-binding modules

(2013) Harry J Gilbert et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

GenBank

(2013) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

Microbial carbohydrate esterases deacetylating plant polysaccharides

(2012) Peter Biely   BIOTECHNOLOGY ADVANCES

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Insights into the recognition of the human glycome by microbial carbohydrate-binding modules

(2012) Elizabeth Ficko-Blean et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Crystal structure of 1,3Gal43A, an exo-β-1,3-galactanase from Clostridium thermocellum

(2012) Daohua Jiang et al.   JOURNAL OF STRUCTURAL BIOLOGY

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Functional Metagenomics Unveils a Multifunctional Glycosyl Hydrolase from the Family 43 Catalysing the Breakdown of Plant Polymers in the Calf Rumen

(2012) Manuel Ferrer et al.   PLoS One

Introducing endo-xylanase activity into an exo-acting arabinofuranosidase that targets side chains

(2012) L. S. McKee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Signature Active Site Architectures Illuminate the Molecular Basis for Ligand Specificity in Family 35 Carbohydrate Binding Module,

(2010) Márcia A. S. Correia et al.   BIOCHEMISTRY

Consolidation of glycosyl hydrolase family 30: A dual domain 4/7 hydrolase family consisting of two structurally distinct groups

(2010) Franz J. St John et al.   FEBS LETTERS

Mechanistic insights into a Ca2+-dependent family of α-mannosidases in a human gut symbiont

(2010) Yanping Zhu et al.   Nature Chemical Biology

Analysis of the Structural and Functional Diversity of Plant Cell Wall Specific Family 6 Carbohydrate Binding Modules

(2009) D. Wade Abbott et al.   BIOCHEMISTRY

The family 6 carbohydrate-binding modules have coevolved with their appended catalytic modules toward similar substrate specificity

(2009) Gurvan Michel et al.   GLYCOBIOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Structural analysis of a glycoside hydrolase family 43 arabinoxylan arabinofuranohydrolase in complex with xylotetraose reveals a different binding mechanism compared with other members of the same family

(2008) Elien Vandermarliere et al.   BIOCHEMICAL JOURNAL

TheCellvibrio japonicusMannanaseCjMan26C Displays a Uniqueexo-Mode of Action That Is Conferred by Subtle Changes to the Distal Region of the Active Site

(2008) Alan Cartmell et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Glycosyltransferases: Structures, Functions, and Mechanisms

(2007) L.L. Lairson et al.   Annual Review of Biochemistry