Discovery and characterization of family 39 glycoside hydrolases from rumen anaerobic fungi with polyspecific activity on rare arabinosyl substrates

Complex pectin metabolism by gut bacteria reveals novel catalytic functions

(2017) Didier Ndeh et al.   NATURE

Dividing the Large Glycoside Hydrolase Family 43 into Subfamilies: a Motivation for Detailed Enzyme Characterization

(2016) Keith Mewis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes

(2016) Kevin V. Solomon et al.   SCIENCE

The Plant Cell Wall: A Complex and Dynamic Structure As Revealed by the Responses of Genes under Stress Conditions

(2016) Kelly Houston et al.   Frontiers in Plant Science

A multifunctional GH39 glycoside hydrolase from the anaerobic gut fungusOrpinomycessp. strain C1A

(2016) Jessica M. Morrison et al.   PeerJ

Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A

(2015) M. B. Couger et al.   Biotechnology for Biofuels

Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2

(2015) Richard McLean et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen

(2014) Xin Dai et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Formulation of enzyme blends to maximize the hydrolysis of alkaline peroxide pretreated alfalfa hay and barley straw by rumen enzymes and commercial cellulases

(2014) Ajay Badhan et al.   BMC BIOTECHNOLOGY

Expression and characterization of a GH43 endo-arabinanase from Thermotoga thermarum

(2014) Hao Shi et al.   BMC BIOTECHNOLOGY

The robustness and innovability of protein folds

(2014) Ágnes Tóth-Petróczy et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Anaerobic fungi (phylumNeocallimastigomycota): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential

(2014) Robert J. Gruninger et al.   FEMS MICROBIOLOGY ECOLOGY

Characterization of a Novel β-l-Arabinofuranosidase inBifidobacterium longum

(2014) Kiyotaka Fujita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Analysis of Glucuronoxylan-specific Xyn30D and Its Attached CBM35 Domain Gives Insights into the Role of Modularity in Specificity

(2014) M. Angela Sainz-Polo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanistic Strategies for Catalysis Adopted by Evolutionary Distinct Family 43 Arabinanases

(2014) Camila R. Santos et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Evolving Views of Pectin Biosynthesis

(2013) Melani A. Atmodjo et al.   Annual Review of Plant Biology

Structure and Function of Carbohydrate-Binding Module Families 13 and 42 of Glycoside Hydrolases, Comprising a β-Trefoil Fold

(2013) Zui FUJIMOTO   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

AnArabidopsisCell Wall Proteoglycan Consists of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein

(2013) Li Tan et al.   PLANT CELL

The accessory domain changes the accessibility and molecular topography of the catalytic interface in monomeric GH39 β-xylosidases

(2012) Camila Ramos Santos et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Rumen microbial (meta)genomics and its application to ruminant production

(2012) D. P. Morgavi et al.   Animal

Crystal Structures of Glycoside Hydrolase Family 51 α-L-Arabinofuranosidase fromThermotoga maritima

(2012) Do-Hyun IM et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Galactofuranose in eukaryotes: aspects of biosynthesis and functional impact

(2011) B. Tefsen et al.   GLYCOBIOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Snapshot of the Eukaryotic Gene Expression in Muskoxen Rumen—A Metatranscriptomic Approach

(2011) Meng Qi et al.   PLoS One

Rhamnogalacturonan-I: A Structurally Puzzling and Functionally Versatile Polysaccharide from Plant Cell Walls and Mucilages

(2011) Beda M. Yapo   Polymer Reviews

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Experimental phasing withSHELXC/D/E: combining chain tracing with density modification

(2010) George M. Sheldrick   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Recent developments in classical density modification

(2010) Kevin Cowtan   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Molecular Cloning and Characterization of a β-l-Arabinobiosidase inBifidobacterium longumThat Belongs to a Novel Glycoside Hydrolase Family

(2010) Kiyotaka Fujita et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Dali server: conservation mapping in 3D

(2010) Liisa Holm et al.   NUCLEIC ACIDS RESEARCH

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Structure of the Complex between a Branched Pentasaccharide andThermobacillus xylanilyticusGH-51 Arabinofuranosidase Reveals Xylan-Binding Determinants and Induced Fit†‡

(2008) Gabriel Paës et al.   BIOCHEMISTRY

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

(2008) Gerrit Langer et al.   Nature Protocols

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

(2008) Ofir Goldenberg et al.   NUCLEIC ACIDS RESEARCH

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH