Functional Analyses of Resurrected and Contemporary Enzymes Illuminate an Evolutionary Path for the Emergence of Exolysis in Polysaccharide Lyase Family 2

Automatic prediction of polysaccharide utilization loci in Bacteroidetes species

(2014) Nicolas Terrapon et al.   BIOINFORMATICS

Using structure to inform carbohydrate binding module function

(2014) D Wade Abbott et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structure of the oligogalacturonate-specific KdgM porin

(2014) C. A. J. Hutter et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

An Ancestral Member of the Polysaccharide Lyase Family 2 Displays Endolytic Activity and Magnesium Dependence

(2013) D. Wade Abbott et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

Completion of autobuilt protein models using a database of protein fragments

(2012) Kevin Cowtan   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure of a pectin methylesterase fromYersinia enterocolitica

(2012) Alisdair B. Boraston et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)

(2012) Henrik Aspeborg et al.   BMC EVOLUTIONARY BIOLOGY

Vibrio vulnificus: Death on the Half Shell. A Personal Journey with the Pathogen and its Ecology

(2012) James D. Oliver   MICROBIAL ECOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

A hierarchical classification of polysaccharide lyases for glycogenomics

(2010) Vincent Lombard et al.   BIOCHEMICAL JOURNAL

Consolidation of glycosyl hydrolase family 30: A dual domain 4/7 hydrolase family consisting of two structurally distinct groups

(2010) Franz J. St John et al.   FEBS LETTERS

Structural and mechanistic classification of uronic acid-containing polysaccharide lyases

(2010) M.-L. Garron et al.   GLYCOBIOLOGY

The Active Site of Oligogalacturonate Lyase Provides Unique Insights into Cytoplasmic Oligogalacturonate β-Elimination

(2010) D. Wade Abbott et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Calcium at the Cell Wall-Cytoplast Interface

(2010) Peter K. Hepler et al.   Journal of Integrative Plant Biology

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Calciomics: prediction and analysis of EF-hand calcium binding proteins by protein engineering

(2010) YanYi Chen et al.   Science China-Chemistry

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The structure, function, and biosynthesis of plant cell wall pectic polysaccharides

(2009) Kerry Hosmer Caffall et al.   CARBOHYDRATE RESEARCH

Structural Determinants Responsible for Substrate Recognition and Mode of Action in Family 11 Polysaccharide Lyases

(2009) Akihito Ochiai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Structural Biology of Pectin Degradation by Enterobacteriaceae

(2008) D. W. Abbott et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS