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Title
Understanding and designing head-to-tail cyclic peptides
Authors
Keywords
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Journal
BIOPOLYMERS
Volume -, Issue -, Pages e23113
Publisher
Wiley
Online
2018-03-12
DOI
10.1002/bip.23113
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Note: Only part of the references are listed.- Toward accurately modeling N-methylated cyclic peptides
- (2017) Diana P. Slough et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Mapping the sequence–structure relationships of simple cyclic hexapeptides
- (2017) Sean M. McHugh et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Cyclic peptide oral bioavailability: Lessons from the past
- (2016) Conan K Wang et al. BIOPOLYMERS
- Design and Development of a Cyclic Decapeptide Scaffold with Suitable Properties for Bioavailability and Oral Exposure
- (2016) Marianne Fouché et al. ChemMedChem
- Hitting a Moving Target: How Does anN-Methyl Group Impact Biological Activity?
- (2016) Yen Chin Koay et al. ChemMedChem
- Computational methods to design cyclic peptides
- (2016) Sean M McHugh et al. CURRENT OPINION IN CHEMICAL BIOLOGY
- Insights into How Cyclic Peptides Switch Conformations
- (2016) Sean M. McHugh et al. Journal of Chemical Theory and Computation
- Accurate Structure Prediction and Conformational Analysis of Cyclic Peptides with Residue-Specific Force Fields
- (2016) Hao Geng et al. Journal of Physical Chemistry Letters
- Finding Our Way in the Dark Proteome
- (2016) Asmit Bhowmick et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Experimental Inferential Structure Determination of Ensembles for Intrinsically Disordered Proteins
- (2016) David H. Brookes et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Analysis of Loops that Mediate Protein–Protein Interactions and Translation into Submicromolar Inhibitors
- (2016) Timothy R. Siegert et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- PepComposer: computational design of peptides binding to a given protein surface
- (2016) Agnieszka Obarska-Kosinska et al. NUCLEIC ACIDS RESEARCH
- Peptiderive server: derive peptide inhibitors from protein–protein interactions
- (2016) Yuval Sedan et al. NUCLEIC ACIDS RESEARCH
- The Synthesis of Structurally Diverse Macrocycles By Successive Ring Expansion
- (2015) Christiana Kitsiou et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues
- (2015) Sandeep Singh et al. Biology Direct
- Metadynamics Simulations Rationalise the Conformational Effects Induced byN-Methylation of RGD Cyclic Hexapeptides
- (2015) Cristina Paissoni et al. CHEMISTRY-A EUROPEAN JOURNAL
- Cyclic and Macrocyclic Peptides as Chemical Tools To Recognise Protein Surfaces and Probe Protein-Protein Interactions
- (2015) Teresa A. F. Cardote et al. ChemMedChem
- Molecular Simulation of Conformational Pre-Organization in Cyclic RGD Peptides
- (2015) Amanda E. Wakefield et al. Journal of Chemical Information and Modeling
- Improved Peptide and Protein Torsional Energetics with the OPLS-AA Force Field
- (2015) Michael J. Robertson et al. Journal of Chemical Theory and Computation
- OPLS3: A Force Field Providing Broad Coverage of Drug-like Small Molecules and Proteins
- (2015) Edward Harder et al. Journal of Chemical Theory and Computation
- Going Out on a Limb: Delineating The Effects of β-Branching, N-Methylation, and Side Chain Size on the Passive Permeability, Solubility, and Flexibility of Sanguinamide A Analogues
- (2015) Andrew T. Bockus et al. JOURNAL OF MEDICINAL CHEMISTRY
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- (2015) Robert P. Morse et al. JOURNAL OF MOLECULAR BIOLOGY
- Coupled Two-Dimensional Main-Chain Torsional Potential for Protein Dynamics II: Performance and Validation
- (2015) Ya Gao et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Cell-Permeable Cyclic Peptides from Synthetic Libraries Inspired by Natural Products
- (2015) William M. Hewitt et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Toward structure prediction of cyclic peptides
- (2015) Hongtao Yu et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Antimicrobial Cyclic Peptides for Plant Disease Control
- (2015) Dong Wan Lee et al. Plant Pathology Journal
- Targeting DnaN for tuberculosis therapy using novel griselimycins
- (2015) A. Kling et al. SCIENCE
- Macrocycles: lessons from the distant past, recent developments, and future directions
- (2015) Andrei K. Yudin Chemical Science
- Anatomy of β-Strands at Protein–Protein Interfaces
- (2014) Andrew M. Watkins et al. ACS Chemical Biology
- A bicyclic peptide scaffold promotes phosphotyrosine mimicry and cellular uptake
- (2014) Justin S. Quartararo et al. BIOORGANIC & MEDICINAL CHEMISTRY
- Computational Screening and Selection of Cyclic Peptide Hairpin Mimetics by Molecular Simulation and Kinetic Network Models
- (2014) Asghar M. Razavi et al. Journal of Chemical Information and Modeling
- Macrocycle Conformational Sampling with MacroModel
- (2014) K. Shawn Watts et al. Journal of Chemical Information and Modeling
- Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction
- (2014) Yimin Shen et al. Journal of Chemical Theory and Computation
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- (2014) Eugene Yedvabny et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Residue-Specific Force Field Based on the Protein Coil Library. RSFF1: Modification of OPLS-AA/L
- (2014) Fan Jiang et al. JOURNAL OF PHYSICAL CHEMISTRY B
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- (2014) Chen-Yang Zhou et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Comprehensive analysis of loops at protein-protein interfaces for macrocycle design
- (2014) Jason Gavenonis et al. Nature Chemical Biology
- Solvent-induced conformational changes in cyclic peptides: a vibrational circular dichroism study
- (2014) Christian Merten et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
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- (2014) Wanapinun Nawae et al. Scientific Reports
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- (2013) C. M. Bergey et al. BIOINFORMATICS
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- (2013) I-Jen Chen et al. BIOORGANIC & MEDICINAL CHEMISTRY
- Druggable protein–protein interactions – from hot spots to hot segments
- (2013) Nir London et al. CURRENT OPINION IN CHEMICAL BIOLOGY
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- (2013) João M. Damas et al. Journal of Chemical Theory and Computation
- A Lead (II) 3D Coordination Polymer Based on a Marine Cyclic Peptide Motif
- (2013) Subrata Chakraborty et al. MOLECULES
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- (2012) Yun Tong et al. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
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- (2012) David J. Craik et al. Chemical Biology & Drug Design
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- (2012) Robert Chapman et al. CHEMICAL SOCIETY REVIEWS
- Intestinal Permeability of Cyclic Peptides: Common Key Backbone Motifs Identified
- (2012) Johannes G. Beck et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides
- (2012) P. Thevenet et al. NUCLEIC ACIDS RESEARCH
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- (2012) G. L. Butterfoss et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2011) Stefano Piana et al. BIOPHYSICAL JOURNAL
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- (2011) Nathan Schmid et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
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- (2011) Fergal J. Duffy et al. Journal of Chemical Information and Modeling
- Macrocycles Are Great Cycles: Applications, Opportunities, and Challenges of Synthetic Macrocycles in Drug Discovery
- (2011) Eric Marsault et al. JOURNAL OF MEDICINAL CHEMISTRY
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- (2011) Jun Zhao et al. JOURNAL OF NATURAL PRODUCTS
- In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues
- (2011) Jérôme Beaufays et al. JOURNAL OF PEPTIDE SCIENCE
- Assessing Helical Protein Interfaces for Inhibitor Design
- (2011) Brooke N. Bullock et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Processable Cyclic Peptide Nanotubes with Tunable Interiors
- (2011) Rami Hourani et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- On-resin N-methylation of cyclic peptides for discovery of orally bioavailable scaffolds
- (2011) Tina R White et al. Nature Chemical Biology
- Experimental and computational insights into the conformations of tunicyclin E, a new cycloheptapeptide from Psammosilene tunicoides
- (2011) Jun-Mian Tian et al. RSC Advances
- Systematic Analysis of Helical Protein Interfaces Reveals Targets for Synthetic Inhibitors
- (2010) Andrea L. Jochim et al. ACS Chemical Biology
- Conformer Generation with OMEGA: Algorithm and Validation Using High Quality Structures from the Protein Databank and Cambridge Structural Database
- (2010) Paul C. D. Hawkins et al. Journal of Chemical Information and Modeling
- Stylissamides E and F, Cyclic Heptapeptides from the Caribbean SpongeStylissa caribica
- (2010) Christine Cychon et al. JOURNAL OF NATURAL PRODUCTS
- MultipleN-Methylation of MT-II Backbone Amide Bonds Leads to Melanocortin Receptor Subtype hMC1R Selectivity: Pharmacological and Conformational Studies
- (2010) Lucas Doedens et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?
- (2010) Nir London et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Nascent structure–activity relationship study of a diastereomeric series of kappa opioid receptor antagonists derived from CJ-15,208
- (2009) Roland E. Dolle et al. BIOORGANIC & MEDICINAL CHEMISTRY LETTERS
- Rolloamides A and B, Cytotoxic Cyclic Heptapeptides Isolated from the Caribbean Marine SpongeEurypon laughlini
- (2009) David E. Williams et al. JOURNAL OF NATURAL PRODUCTS
- Optimized Molecular Dynamics Force Fields Applied to the Helix−Coil Transition of Polypeptides
- (2009) Robert B. Best et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
- (2009) Daniel J Mandell et al. NATURE METHODS
- Euryjanicin A: a new cycloheptapeptide from the Caribbean marine sponge Prosuberites laughlini
- (2009) Jan Vicente et al. TETRAHEDRON LETTERS
- Improving Oral Bioavailability of Peptides by Multiple N-Methylation: Somatostatin Analogues
- (2008) Eric Biron et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- I-TASSER server for protein 3D structure prediction
- (2008) Yang Zhang BMC BIOINFORMATICS
- CanN-methylated amino acids serve as substitutes for prolines in conformational design of cyclic pentapeptides?
- (2008) Burkhardt Laufer et al. JOURNAL OF PEPTIDE SCIENCE
- A Test on Peptide Stability of AMBER Force Fields with Implicit Solvation
- (2008) M. Scott Shell et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The exploration of macrocycles for drug discovery — an underexploited structural class
- (2008) Edward M. Driggers et al. NATURE REVIEWS DRUG DISCOVERY
- 3D-structure of cycloreticulin C and glabrin A, cyclopeptides from the seeds of Annona reticulata
- (2008) Alassane Wélé et al. TETRAHEDRON
- Conformational Preference and Potential Templates ofN-Methylated Cyclic Pentaalanine Peptides
- (2007) Jayanta Chatterjee et al. CHEMISTRY-A EUROPEAN JOURNAL
- Sequence and three-dimensional structure of cycloreticulins A and B, new cyclooctapeptides from the seeds of Annona reticulata
- (2007) Alassane Wélé et al. TETRAHEDRON
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