Effects of cover crop in an apple orchard on microbial community composition, networks, and potential genes involved with degradation of crop residues in soil

Long-term nitrogen fertilization impacts soil fungal and bacterial community structures in a dryland soil of Loess Plateau in China

(2017) Jinshan Liu et al.   JOURNAL OF SOILS AND SEDIMENTS

Temporal variability of soil management effects on soil hydrological properties, runoff and erosion at the field scale in a hillslope vineyard, North-West Italy

(2017) Marcella Biddoccu et al.   SOIL & TILLAGE RESEARCH

Thirty-one years of rice-rice-green manure rotations shape the rhizosphere microbial community and enrich beneficial bacteria

(2017) Xiaoxia Zhang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cover cropping frequency is the main driver of soil microbial changes during six years of organic vegetable production

(2017) Eric B. Brennan et al.   SOIL BIOLOGY & BIOCHEMISTRY

The legacy effect of cover crops on soil fungal populations in a cereal rotation

(2016) Andrew P. Detheridge et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Changes in the soil microbial community after reductive soil disinfestation and cucumber seedling cultivation

(2016) Xinqi Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Temperature effects on soil organic carbon, soil labile organic carbon fractions, and soil enzyme activities under long-term fertilization regimes

(2016) Ruimin Qi et al.   APPLIED SOIL ECOLOGY

Bacterial alkaline phosphomonoesterase in the rhizospheres of plants grown in Chilean extreme environments

(2016) Jacquelinne J. Acuña et al.   BIOLOGY AND FERTILITY OF SOILS

Shifts in indigenous microbial communities during the anaerobic degradation of pentachlorophenol in upland and paddy soils from southern China

(2016) Yating Chen et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Cover crops prevent the deleterious effect of nitrogen fertilisation on bacterial diversity by maintaining the carbon content of ploughed soil

(2016) Julien Verzeaux et al.   GEODERMA

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by vineyard management

(2016) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Organic farming induces changes in soil microbiota that affect agro-ecosystem functions

(2016) Giuliano Bonanomi et al.   SOIL BIOLOGY & BIOCHEMISTRY

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

(2016) Max-Bernhard Ballhausen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Thirty four years of nitrogen fertilization decreases fungal diversity and alters fungal community composition in black soil in northeast China

(2016) Jing Zhou et al.   SOIL BIOLOGY & BIOCHEMISTRY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Rhizospheric fungi of Panax notoginseng: diversity and antagonism to host phytopathogens

(2016) Cui-Ping Miao et al.   Journal of Ginseng Research

Molecular Detection and Environment-Specific Diversity of Glycosyl Hydrolase Family 1 β-Glucosidase in Different Habitats

(2016) Rameshwar Tiwari et al.   Frontiers in Microbiology

Mechanisms involved in xyloglucan catabolism by the cellulosome-producing bacterium Ruminiclostridium cellulolyticum

(2016) Julie Ravachol et al.   Scientific Reports

Maize lines with different nitrogen use efficiency select bacterial communities with different β-glucosidase-encoding genes and glucosidase activity in the rhizosphere

(2015) Shamina I. Pathan et al.   BIOLOGY AND FERTILITY OF SOILS

Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil

(2015) Carl-Eric Wegner et al.   ENVIRONMENTAL MICROBIOLOGY

Determinants of bacterial communities in Canadian agroforestry systems

(2015) Samiran Banerjee et al.   ENVIRONMENTAL MICROBIOLOGY

Vineyard soil bacterial diversity and composition revealed by 16S rRNA genes: Differentiation by geographic features

(2015) Kayla N. Burns et al.   SOIL BIOLOGY & BIOCHEMISTRY

Impact of inorganic nitrogen additions on microbes in biological soil crusts

(2015) Jin Wang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing

(2014) Lorena M. Lagos et al.   BIOLOGY AND FERTILITY OF SOILS

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

Soil properties and apricot growth under intercropping and mulching with erect milk vetch in the loess hilly-gully region

(2014) Sheni Du et al.   PLANT AND SOIL

Reduced nitrogen leaching by intercropping maize with red fescue on sandy soils in North Europe: a combined field and modeling study

(2014) Kiril Manevski et al.   PLANT AND SOIL

Mulching practices altered soil bacterial community structure and improved orchard productivity and apple quality after five growing seasons

(2014) Yuexing Chen et al.   SCIENTIA HORTICULTURAE

Soil bacterial communities shaped by geochemical factors and land use in a less-explored area, Tibetan Plateau

(2013) Xiangyu Guan et al.   BMC GENOMICS

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Evidence that arbuscular mycorrhizal and phosphate-solubilizing fungi alleviate NaCl stress in the halophyte Kosteletzkya virginica: nutrient uptake and ion distribution within root tissues

(2013) Huan Shi Zhang et al.   MYCORRHIZA

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ascomycota Members Dominate Fungal Communities during Straw Residue Decomposition in Arable Soil

(2013) Anzhou Ma et al.   PLoS One

Soil-Borne Bacterial Structure and Diversity Does Not Reflect Community Activity in Pampa Biome

(2013) Manoeli Lupatini et al.   PLoS One

Fungal networks in yield-invigorating and -debilitating soils induced by prolonged potato monoculture

(2013) Lihua Lu et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction

(2013) Pankaj Trivedi et al.   TRENDS IN MICROBIOLOGY

Soil enzymology: classical and molecular approaches

(2012) P. Nannipieri et al.   BIOLOGY AND FERTILITY OF SOILS

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Influence of geogenic factors on microbial communities in metallogenic Australian soils

(2012) Frank Reith et al.   ISME Journal

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

Bacterial communities in soil mimic patterns of vegetative succession and ecosystem climax but are resilient to change between seasons

(2012) Mark A. Williams et al.   SOIL BIOLOGY & BIOCHEMISTRY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Interactive influences of climate and parent material on soil microbial community structure in Bornean tropical forest ecosystems

(2011) Rota Wagai et al.   ECOLOGICAL RESEARCH

Defining seasonal marine microbial community dynamics

(2011) Jack A Gilbert et al.   ISME Journal

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Molecular detection and diversity of xylanase genes in alpine tundra soil

(2010) Guozeng Wang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases

(2010) Eva Bellemain et al.   BMC MICROBIOLOGY

Soil fungal communities as indicators for replanting new peach orchards in intensively cultivated areas

(2010) Luisa M. Manici et al.   EUROPEAN JOURNAL OF AGRONOMY

Transcriptomic Analyses of Xylan Degradation byPrevotella bryantiiand Insights into Energy Acquisition by Xylanolytic Bacteroidetes

(2010) Dylan Dodd et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Fungi mediate long term sequestration of carbon and nitrogen in soil through their priming effect

(2010) S. Fontaine et al.   SOIL BIOLOGY & BIOCHEMISTRY

Cover crops in Victorian apple orchards: Effects on production, natural enemies and pests across a season

(2009) Nicole J. Bone et al.   CROP PROTECTION

Centrality measures and the importance of generalist species in pollination networks

(2009) Ana M. Martín González et al.   Ecological Complexity

Diversity of soil and rhizosphere fungi under Araucaria bidwillii (Bunya pine) at an Australian tropical montane rainforest site

(2009) N. J. A. Curlevski et al.   FUNGAL DIVERSITY

The architecture of mutualistic networks minimizes competition and increases biodiversity

(2009) Ugo Bastolla et al.   NATURE

Microbial community structure and its functional implications

(2009) Jed A. Fuhrman   NATURE

Spatial and temporal changes to the water regime of a Mediterranean vineyard due to the adoption of cover cropping

(2008) Florian Celette et al.   EUROPEAN JOURNAL OF AGRONOMY

Tag-encoded pyrosequencing analysis of bacterial diversity in a single soil type as affected by management and land use

(2008) V. Acosta-Martínez et al.   SOIL BIOLOGY & BIOCHEMISTRY