Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data

Exploration of the Germline Genome of the Ciliate Chilodonella uncinata through Single-Cell Omics (Transcriptomics and Genomics)

(2018) Xyrus X. Maurer-Alcalá et al.   mBio

Insights into transgenerational epigenetics from studies of ciliates

(2017) Olivia A. Pilling et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Parasites dominate hyperdiverse soil protist communities in Neotropical rainforests

(2017) Frédéric Mahé et al.   Nature Ecology & Evolution

Impacts of Climate Warming on Alpine Lake Biota Over the Past Decade

(2016) K. Weckström et al.   ARCTIC ANTARCTIC AND ALPINE RESEARCH

Oligotrophic lagoons of the South Pacific Ocean are home to a surprising number of novel eukaryotic microorganisms

(2016) Eunsoo Kim et al.   ENVIRONMENTAL MICROBIOLOGY

Local diversity of heathland Cercozoa explored by in-depth sequencing

(2016) Christoffer Bugge Harder et al.   ISME Journal

Patterns and processes in microbial biogeography: do molecules and morphologies give the same answers?

(2016) Luciana F Santoferrara et al.   ISME Journal

Characterization of three novel species of Labyrinthulomycota isolated from ochre sea stars (Pisaster ochraceus)

(2016) Rebecca FioRito et al.   MARINE BIOLOGY

A Phylogenomic Framework to Study the Diversity and Evolution of Stramenopiles (=Heterokonts)

(2016) Romain Derelle et al.   MOLECULAR BIOLOGY AND EVOLUTION

Unexpected biodiversity of ciliates in marine samples from below the photic zone

(2016) Jean-David Grattepanche et al.   MOLECULAR ECOLOGY

Plankton networks driving carbon export in the oligotrophic ocean

(2016) Lionel Guidi et al.   NATURE

In situ imaging reveals the biomass of giant protists in the global ocean

(2016) Tristan Biard et al.   NATURE

Heterokont Predator Develorapax marinus gen. et sp. nov. – A Model of the Ochrophyte Ancestor

(2016) Vladimir V. Aleoshin et al.   Frontiers in Microbiology

The Organellar Genomes ofChromeraandVitrella, the Phototrophic Relatives of Apicomplexan Parasites

(2015) Miroslav Oborník et al.   Annual Review of Microbiology

Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing

(2015) Ramon Massana et al.   ENVIRONMENTAL MICROBIOLOGY

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Large variability of bathypelagic microbial eukaryotic communities across the world’s oceans

(2015) Massimo C Pernice et al.   ISME Journal

Morphological Identities of Two Different Marine Stramenopile Environmental Sequence Clades:Bicosoeca kenaiensis(Hilliard, 1971) andCantina marsupialis(Larsen and Patterson, 1990) gen. nov., comb. nov.

(2015) Naoji Yubuki et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Changing the picture of Earth's earliest fossils (3.5–1.9 Ga) with new approaches and new discoveries

(2015) Martin D. Brasier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthesis of phylogeny and taxonomy into a comprehensive tree of life

(2015) Cody E. Hinchliff et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A New Deep-branching Stramenopile, Platysulcus tardus gen. nov., sp. nov.

(2015) Takashi Shiratori et al.   PROTIST

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

An unexpected role for mixotrophs in the response of peatland carbon cycling to climate warming

(2015) Vincent E. J. Jassey et al.   Scientific Reports

How discordant morphological and molecular evolution among microorganisms can revise our notions of biodiversity on Earth

(2014) Daniel J. G. Lahr et al.   BIOESSAYS

Rhizaria

(2014) Fabien Burki et al.   CURRENT BIOLOGY

Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems

(2014) Marianne Simon et al.   ENVIRONMENTAL MICROBIOLOGY

Gut Microbes and the Brain: Paradigm Shift in Neuroscience

(2014) E. A. Mayer et al.   JOURNAL OF NEUROSCIENCE

Proteomics Analysis of Heterogeneous Flagella in Brown Algae (Stramenopiles)

(2014) Gang Fu et al.   PROTIST

Taxon-Rich Phylogenomic Analyses Resolve the Eukaryotic Tree of Life and Reveal the Power of Subsampling by Sites

(2014) Laura A. Katz et al.   SYSTEMATIC BIOLOGY

The others: our biased perspective of eukaryotic genomes

(2014) Javier del Campo et al.   TRENDS IN ECOLOGY & EVOLUTION

Diversity of diversity: conceptual and methodological differences in biodiversity estimates of eukaryotic microbes as compared to bacteria

(2014) Jean-David Grattepanche et al.   TRENDS IN MICROBIOLOGY

Paleobiological Perspectives on Early Eukaryotic Evolution

(2014) A. H. Knoll   Cold Spring Harbor Perspectives in Biology

Single cell genome analysis of an uncultured heterotrophic stramenopile

(2014) Rajat S. Roy et al.   Scientific Reports

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

Phylogeny of Heterokonta: Incisomonas marina, a uniciliate gliding opalozoan related to Solenicola (Nanomonadea), and evidence that Actinophryida evolved from raphidophytes

(2012) Thomas Cavalier-Smith et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Microplanktonic Community Structure in a Coastal System Relative to a Phaeocystis Bloom Inferred from Morphological and Tag Pyrosequencing Methods

(2012) Sébastien Monchy et al.   PLoS One

Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description

(2010) Paul Z. Goldstein et al.   BIOESSAYS

Microbes Rule!

(2010) Margo G. Haygood   EcoHealth

The integrative future of taxonomy

(2010) Jose M. Padial et al.   Frontiers in Zoology

The endosymbiotic origin, diversification and fate of plastids

(2010) P. J. Keeling   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

A Molecular Genetic Timescale for the Diversification of Autotrophic Stramenopiles (Ochrophyta): Substantive Underestimation of Putative Fossil Ages

(2010) Joseph W. Brown et al.   PLoS One

A common red algal origin of the apicomplexan, dinoflagellate, and heterokont plastids

(2010) J. Janouskovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrastructure and Molecular Phylogenetic Position of a Novel Phagotrophic Stramenopile from Low Oxygen Environments: Rictus lutensis gen. et sp. nov. (Bicosoecida, incertae sedis)

(2010) Naoji Yubuki et al.   PROTIST

Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

(2010) Laura Wegener Parfrey et al.   SYSTEMATIC BIOLOGY

Helping plants to deal with insects: the role of beneficial soil-borne microbes

(2010) Ana Pineda et al.   TRENDS IN PLANT SCIENCE

Sizing up the genomic footprint of endosymbiosis

(2009) Marek Elias et al.   BIOESSAYS

The Puzzle of Plastid Evolution

(2009) John M. Archibald   CURRENT BIOLOGY

Epigenetic inheritance in ciliates

(2009) Mariusz Nowacki et al.   CURRENT OPINION IN MICROBIOLOGY

Grazing rates and functional diversity of uncultured heterotrophic flagellates

(2009) Ramon Massana et al.   ISME Journal

Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis

(2009) PATRICK J. KEELING   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Flagellar Motions in Phototactic Steering in a Brown Algal Swarmer

(2009) Shigeru Matsunaga et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Phylogeny, Taxonomy, and Astounding Genetic Diversity of Glissomonadida ord. nov., The Dominant Gliding Zooflagellates in Soil (Protozoa: Cercozoa)

(2009) Alexis T. Howe et al.   PROTIST

Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.

(2009) David Bass et al.   PROTIST

Chromalveolate plastids: direct descent or multiple endosymbioses?

(2009) Andrzej Bodył et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Protists are microbes too: a perspective

(2008) David A Caron et al.   ISME Journal

A HYPOTHESIS FOR PLASTID EVOLUTION IN CHROMALVEOLATES1

(2008) M. Virginia Sanchez-Puerta et al.   JOURNAL OF PHYCOLOGY

The Dynamic Nature of Eukaryotic Genomes

(2008) L. W. Parfrey et al.   MOLECULAR BIOLOGY AND EVOLUTION

A photosynthetic alveolate closely related to apicomplexan parasites

(2008) Robert B. Moore et al.   NATURE

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

(2008) Susan M. Huse et al.   PLoS Genetics