Local diversity of heathland Cercozoa explored by in-depth sequencing

Metatranscriptomic census of active protists in soils

(2015) Stefan Geisen et al.   ISME Journal

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context

(2014) Micah Dunthorn et al.   MOLECULAR BIOLOGY AND EVOLUTION

A three-gene phylogeny of the Mycena pura complex reveals 11 phylogenetic species and shows ITS to be unreliable for species identification

(2013) Christoffer B. Harder et al.   Fungal Biology

Vampires in the oceans: predatory cercozoan amoebae in marine habitats

(2013) Cédric Berney et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sphenoderiidae (fam. nov.), a New Clade of Euglyphid Testate Amoebae Characterized by Small, Round Scales Surrounding the Aperture

(2013) Auriel P. Chatelain et al.   PROTIST

Global biogeography of highly diverse protistan communities in soil

(2012) Scott T Bates et al.   ISME Journal

Comparing the Hyper-Variable V4 and V9 Regions of the Small Subunit rDNA for Assessment of Ciliate Environmental Diversity

(2012) Micah Dunthorn et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Shedding Light on Vampires: The Phylogeny of Vampyrellid Amoebae Revisited

(2012) Sebastian Hess et al.   PLoS One

Distance and Character-Based Evaluation of the V4 Region of the 18S rRNA Gene for the Identification of Diatoms (Bacillariophyceae)

(2012) Ian A. Luddington et al.   PLoS One

Reticulamoeba Is a Long-Branched Granofilosean (Cercozoa) That Is Missing from Sequence Databases

(2012) David Bass et al.   PLoS One

CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

(2012) Jan Pawlowski et al.   PLOS BIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Global change belowground: impacts of elevated CO2, nitrogen, and summer drought on soil food webs and biodiversity

(2011) Nico Eisenhauer et al.   GLOBAL CHANGE BIOLOGY

Hypervariable regions (V1–V9) of the dinoflagellate 18S rRNA using a large dataset for marker considerations

(2011) Jang-Seu Ki   JOURNAL OF APPLIED PHYCOLOGY

Mataza hastifera n. g., n. sp.: A Possible New Lineage in the Thecofilosea (Cercozoa)

(2011) AKINORI YABUKI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing

(2011) Jan Pawlowski et al.   PLoS One

Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia

(2011) Alexis T. Howe et al.   PROTIST

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

(2010) Fabien Burki et al.   BMC EVOLUTIONARY BIOLOGY

Closely related protist strains have different grazing impacts on natural bacterial communities

(2010) Edvard Glücksman et al.   ENVIRONMENTAL MICROBIOLOGY

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

Testate Amoebae and Nutrient Cycling with Particular Reference to Soils

(2010) David M. Wilkinson et al.   GEOMICROBIOLOGY JOURNAL

Reduced N cycling in response to elevated CO2, warming, and drought in a Danish heathland: Synthesizing results of the CLIMAITE project after two years of treatments

(2010) KLAUS S. LARSEN et al.   GLOBAL CHANGE BIOLOGY

Phylogenetic species delimitation in ectomycorrhizal fungi and implications for barcoding: the case of the Tricholoma scalpturatum complex (Basidiomycota)

(2010) PATRICIA JARGEAT et al.   MOLECULAR ECOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Comparing Potential COI and SSU rDNA Barcodes for Assessing the Diversity and Phylogenetic Relationships of Cyphoderiid Testate Amoebae (Rhizaria: Euglyphida)

(2010) Thierry J. Heger et al.   PROTIST

Organic matter dynamics in a temperate forest soil following enhanced drying

(2010) Andrea Schmitt et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Seasonal variations and effects of nutrient applications on N and P and microbial biomass under two temperate heathland plants

(2009) Pia L. Nielsen et al.   APPLIED SOIL ECOLOGY

Massively parallel tag sequencing reveals the complexity of anaerobic marine protistan communities

(2009) Thorsten Stoeck et al.   BMC BIOLOGY

An SSU rDNA barcoding approach to the diversity of marine interstitial cercozoans, including descriptions of four novel genera and nine novel species

(2009) C. Chantangsi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent

(2009) Thierry J. Heger et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes

(2009) Linda A. Amaral-Zettler et al.   PLoS One

Helkesimastix marina n. sp. (Cercozoa: Sainouroidea superfam. n.) a Gliding Zooflagellate of Novel Ultrastructure and Unusual Ciliary Behaviour

(2009) Thomas Cavalier-Smith et al.   PROTIST

Phylogeny, Taxonomy, and Astounding Genetic Diversity of Glissomonadida ord. nov., The Dominant Gliding Zooflagellates in Soil (Protozoa: Cercozoa)

(2009) Alexis T. Howe et al.   PROTIST

Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.

(2009) David Bass et al.   PROTIST

Ultrastructure, Life Cycle and Molecular Phylogenetic Position of a Novel Marine Sand-Dwelling Cercozoan: Clautriavia biflagellata n. sp.

(2009) Chitchai Chantangsi et al.   PROTIST

Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised

(2008) David Bass et al.   PROTIST

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY