Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

Molecular Data Are Transforming Hypotheses on the Origin and Diversification of Eukaryotes

(2009) Yonas I. Tekle et al.   BIOSCIENCE

The Puzzle of Plastid Evolution

(2009) John M. Archibald   CURRENT BIOLOGY

Evolution: Revisiting the Root of the Eukaryote Tree

(2009) Andrew J. Roger et al.   CURRENT BIOLOGY

Another acquisition of a primary photosynthetic organelle is underway in Paulinella chromatophora

(2009) Takuro Nakayama et al.   CURRENT BIOLOGY

Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates

(2009) Fabien Burki et al.   Genome Biology and Evolution

Untangling the Phylogeny of Amoeboid Protists

(2009) JAN PAWLOWSKI et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis

(2009) PATRICK J. KEELING   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"

(2009) V. Hampl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

(2009) O. Akerborg et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic Footprints of a Cryptic Plastid Endosymbiosis in Diatoms

(2009) A. Moustafa et al.   SCIENCE

Chromalveolate plastids: direct descent or multiple endosymbioses?

(2009) Andrzej Bodył et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic Inference Using Whole Genomes

(2008) Bruce Rannala et al.   Annual Review of Genomics and Human Genetics

Plastid Evolution

(2008) Sven B. Gould et al.   Annual Review of Plant Biology

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

(2008) A. Wehe et al.   BIOINFORMATICS

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

(2008) F. Burki et al.   Biology Letters

Broadly sampled multigene trees of eukaryotes

(2008) Hwan Su Yoon et al.   BMC EVOLUTIONARY BIOLOGY

Using ESTs for phylogenomics: can one accurately infer a phylogenetic tree from a gappy alignment?

(2008) Stefanie Hartmann et al.   BMC EVOLUTIONARY BIOLOGY

The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution

(2008) Christoph Kneip et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Multiple Genes of Apparent Algal Origin Suggest Ciliates May Once Have Been Photosynthetic

(2008) Adrian Reyes-Prieto et al.   CURRENT BIOLOGY

Ultrastructure and molecular phylogeny of Stephanopogon minuta: An enigmatic microeukaryote from marine interstitial environments

(2008) Naoji Yubuki et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

The ZooflagellatesStephanopogonandPercolomonasare a Clade (Class Percolatea: Phylum Percolozoa)

(2008) THOMAS CAVALIER-SMITH et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

(2008) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

The origin of plastids

(2008) C.J Howe et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

EEF2 Analysis Challenges the Monophyly of Archaeplastida and Chromalveolata

(2008) Eunsoo Kim et al.   PLoS One

Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised

(2008) David Bass et al.   PROTIST

Testing Congruence in Phylogenomic Analysis

(2008) Jessica W. Leigh et al.   SYSTEMATIC BIOLOGY

A Rapid Bootstrap Algorithm for the RAxML Web Servers

(2008) Alexandros Stamatakis et al.   SYSTEMATIC BIOLOGY

The eukaryotic tree of life: endosymbiosis takes its TOL

(2008) Christopher E. Lane et al.   TRENDS IN ECOLOGY & EVOLUTION