Plant phenomics: an overview of image acquisition technologies and image data analysis algorithms

Field Scanalyzer: An automated robotic field phenotyping platform for detailed crop monitoring

(2017) Nicolas Virlet et al.   FUNCTIONAL PLANT BIOLOGY

A high-throughput stereo-imaging system for quantifying rape leaf traits during the seedling stage

(2017) Xiong Xiong et al.   Plant Methods

A real-time phenotyping framework using machine learning for plant stress severity rating in soybean

(2017) Hsiang Sing Naik et al.   Plant Methods

High-Throughput Phenotyping and QTL Mapping Reveals the Genetic Architecture of Maize Plant Growth

(2017) Xuehai Zhang et al.   PLANT PHYSIOLOGY

Nonlinear Fusion of Multispectral Citrus Fruit Image Data with Information Contents

(2017) Peilin Li et al.   SENSORS

Multispectral LiDAR Data for Land Cover Classification of Urban Areas

(2017) et al.   SENSORS

Predictions of Tropical Forest Biomass and Biomass Growth Based on Stand Height or Canopy Area Are Improved by Landsat-Scale Phenology across Puerto Rico and the U.S. Virgin Islands

(2017) David Gwenzi et al.   Remote Sensing

Individual Tree Crown Delineation from Airborne Laser Scanning for Diseased Larch Forest Stands

(2017) Chloe Barnes et al.   Remote Sensing

In-Field High-Throughput Phenotyping of Cotton Plant Height Using LiDAR

(2017) Shangpeng Sun et al.   Remote Sensing

High Throughput In vivo Analysis of Plant Leaf Chemical Properties Using Hyperspectral Imaging

(2017) Piyush Pandey et al.   Frontiers in Plant Science

New frontiers in the three-dimensional visualization of plant structure and function

(2016) C. R. Brodersen et al.   AMERICAN JOURNAL OF BOTANY

Comparing Generalized Linear Models and random forest to model vascular plant species richness using LiDAR data in a natural forest in central Chile

(2016) J. Lopatin et al.   REMOTE SENSING OF ENVIRONMENT

A Low Power Digital Accumulation Technique for Digital-Domain CMOS TDI Image Sensor

(2016) Changwei Yu et al.   SENSORS

Machine Learning and Computer Vision System for Phenotype Data Acquisition and Analysis in Plants

(2016) Pedro Navarro et al.   SENSORS

Towards Automated Large-Scale 3D Phenotyping of Vineyards under Field Conditions

(2016) Johann Rose et al.   SENSORS

A Machine Learning Approach to Pedestrian Detection for Autonomous Vehicles Using High-Definition 3D Range Data

(2016) Pedro Navarro et al.   SENSORS

Applying terrestrial lidar for evaluation and calibration of airborne lidar-derived shrub biomass estimates in Arctic tundra

(2016) Heather E. Greaves et al.   Remote Sensing Letters

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

Plant Phenotyping using Probabilistic Topic Models: Uncovering the Hyperspectral Language of Plants

(2016) Mirwaes Wahabzada et al.   Scientific Reports

Field phenotyping of grapevine growth using dense stereo reconstruction

(2015) Maria Klodt et al.   BMC BIOINFORMATICS

In vivo quantitative imaging of photoassimilate transport dynamics and allocation in large plants using a commercial positron emission tomography (PET) scanner

(2015) Abhijit A. Karve et al.   BMC PLANT BIOLOGY

Discrete wavelets transform for improving greenness image segmentation in agricultural images

(2015) M. Guijarro et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

LiDAR: An important tool for next-generation phenotyping technology of high potential for plant phenomics?

(2015) Yi Lin   COMPUTERS AND ELECTRONICS IN AGRICULTURE

ApLeaf: An efficient android-based plant leaf identification system

(2015) Zhong-Qiu Zhao et al.   NEUROCOMPUTING

Hyperspectral phenotyping on the microscopic scale: towards automated characterization of plant-pathogen interactions

(2015) Matheus Kuska et al.   Plant Methods

Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification

(2015) Ralf Metzner et al.   Plant Methods

Automated characterization of flowering dynamics in rice using field-acquired time-series RGB images

(2015) Wei Guo et al.   Plant Methods

Structured Light-Based 3D Reconstruction System for Plants

(2015) Thuy Nguyen et al.   SENSORS

3D Laser Triangulation for Plant Phenotyping in Challenging Environments

(2015) Katrine Kjaer et al.   SENSORS

Accuracy Analysis of a Multi-View Stereo Approach for Phenotyping of Tomato Plants at the Organ Level

(2015) Johann Rose et al.   SENSORS

Estimating Forest Biomass Dynamics by Integrating Multi-Temporal Landsat Satellite Images with Ground and Airborne LiDAR Data in the Coal Valley Mine, Alberta, Canada

(2015) Nasem Badreldin et al.   Remote Sensing

Hyperspectral and Thermal Imaging of Oilseed Rape (Brassica napus) Response to Fungal Species of the Genus Alternaria

(2015) Piotr Baranowski et al.   PLoS One

Metro Maps of Plant Disease Dynamics—Automated Mining of Differences Using Hyperspectral Images

(2015) Mirwaes Wahabzada et al.   PLoS One

Automatic Detection of Diseased Tomato Plants Using Thermal and Stereo Visible Light Images

(2015) Shan-e-Ahmed Raza et al.   PLoS One

Phenotyping and beyond: modelling the relationships between traits

(2014) Christine Granier et al.   CURRENT OPINION IN PLANT BIOLOGY

Design and Evaluation of Multispectral LiDAR for the Recovery of Arboreal Parameters

(2014) Andrew M. Wallace et al.   IEEE TRANSACTIONS ON GEOSCIENCE AND REMOTE SENSING

Indoor and outdoor depth imaging of leaves with time-of-flight and stereo vision sensors: Analysis and comparison

(2014) Wajahat Kazmi et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

Automatic Detection of Regions in Spinach Canopies Responding to Soil Moisture Deficit Using Combined Visible and Thermal Imagery

(2014) Shan-e-Ahmed Raza et al.   PLoS One

Postharvest noninvasive assessment of fresh chestnut (Castanea spp.) internal decay using computer tomography images

(2014) Irwin R. Donis-González et al.   POSTHARVEST BIOLOGY AND TECHNOLOGY

Development of a Wireless Computer Vision Instrument to Detect Biotic Stress in Wheat

(2014) Joaquin Casanova et al.   SENSORS

A Review of Imaging Techniques for Plant Phenotyping

(2014) Lei Li et al.   SENSORS

Infra-Red Thermography as a High-Throughput Tool for Field Phenotyping

(2014) Ankush Prashar et al.   Agronomy-Basel

Proximal Remote Sensing Buggies and Potential Applications for Field-Based Phenotyping

(2014) David Deery et al.   Agronomy-Basel

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Surface feature based classification of plant organs from 3D laserscanned point clouds for plant phenotyping

(2013) Stefan Paulus et al.   BMC BIOINFORMATICS

Automated image analysis framework for high-throughput determination of grapevine berry sizes using conditional random fields

(2013) Ribana Roscher et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies

(2013) Wanneng Yang et al.   CURRENT OPINION IN PLANT BIOLOGY

Image-based plant phenotyping with incremental learning and active contours

(2013) Massimo Minervini et al.   Ecological Informatics

Thermography to explore plant–environment interactions

(2013) J. Miguel Costa et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hyperspectral and multispectral imaging for evaluating food safety and quality

(2013) Jianwei Qin et al.   JOURNAL OF FOOD ENGINEERING

High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis

(2013) Céline Rousseau et al.   Plant Methods

Plant Tissues in 3D via X-Ray Tomography: Simple Contrasting Methods Allow High Resolution Imaging

(2013) Yannick M. Staedler et al.   PLoS One

Rapid Characterization of Vegetation Structure with a Microsoft Kinect Sensor

(2013) George Azzari et al.   SENSORS

Discriminating Crop, Weeds and Soil Surface with a Terrestrial LIDAR Sensor

(2013) Dionisio Andújar et al.   SENSORS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

A novel mesh processing based technique for 3D plant analysis

(2012) Anthony Paproki et al.   BMC PLANT BIOLOGY

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

Evaluating cellulose absorption index (CAI) for non-photosynthetic biomass estimation in the desert steppe of Inner Mongolia

(2012) HongRui Ren et al.   CHINESE SCIENCE BULLETIN

On the use of depth camera for 3D phenotyping of entire plants

(2012) Yann Chéné et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Imaging plants dynamics in heterogenic environments

(2012) Fabio Fiorani et al.   CURRENT OPINION IN BIOTECHNOLOGY

Field-based phenomics for plant genetics research

(2012) Jeffrey W. White et al.   FIELD CROPS RESEARCH

SPICY: towards automated phenotyping of large pepper plants in the greenhouse

(2012) Gerie van der Heijden et al.   FUNCTIONAL PLANT BIOLOGY

A semi-automatic system for high throughput phenotyping wheat cultivars in-field conditions: description and first results

(2012) Alexis Comar et al.   FUNCTIONAL PLANT BIOLOGY

Infrared Thermal Imaging as a Rapid Tool for Identifying Water-Stress Tolerant Maize Genotypes of Different Phenology

(2012) S. Zia et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Positron emission tomography (PET) of radiotracer uptake and distribution in living plants: methodological aspects

(2012) A. K. Converse et al.   JOURNAL OF RADIOANALYTICAL AND NUCLEAR CHEMISTRY

A high throughput robot system for machine vision based plant phenotype studies

(2012) Ram Subramanian et al.   MACHINE VISION AND APPLICATIONS

Fine-scale remotely-sensed cover mapping of coastal dune and salt marsh ecosystems at Cape Cod National Seashore using Random Forests

(2012) Brad C. Timm et al.   REMOTE SENSING OF ENVIRONMENT

Development of a Configurable Growth Chamber with a Computer Vision System to Study Circadian Rhythm in Plants

(2012) Pedro Navarro et al.   SENSORS

Recovery of Forest Canopy Parameters by Inversion of Multispectral LiDAR Data

(2012) Andrew Wallace et al.   Remote Sensing

Crop yield forecasting on the Canadian Prairies using MODIS NDVI data

(2011) M.S. Mkhabela et al.   AGRICULTURAL AND FOREST METEOROLOGY

Estimation of soil water deficit in an irrigated cotton field with infrared thermography

(2011) J. Padhi et al.   FIELD CROPS RESEARCH

Non-invasive approaches for phenotyping of enhanced performance traits in bean

(2011) Uwe Rascher et al.   FUNCTIONAL PLANT BIOLOGY

Multi- and hyperspectral geologic remote sensing: A review

(2011) Freek D. van der Meer et al.   International Journal of Applied Earth Observation and Geoinformation

Nuclear magnetic resonance: a tool for imaging belowground damage caused by Heterodera schachtii and Rhizoctonia solani on sugar beet

(2011) C. Hillnhutter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Developing X-ray Computed Tomography to non-invasively image 3-D root systems architecture in soil

(2011) S. J. Mooney et al.   PLANT AND SOIL

Accurate inference of shoot biomass from high-throughput images of cereal plants

(2011) Mahmood R Golzarian et al.   Plant Methods

Conserved and Divergent Rhythms of Crassulacean Acid Metabolism-Related and Core Clock Gene Expression in the Cactus Opuntia ficus-indica

(2011) I. Mallona et al.   PLANT PHYSIOLOGY

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

The potential of automatic methods of classification to identify leaf diseases from multispectral images

(2011) Sabine D. Bauer et al.   PRECISION AGRICULTURE

High-throughput measurement of rice tillers using a conveyor equipped with x-ray computed tomography

(2011) Wanneng Yang et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

3-D Modeling of Tomato Canopies Using a High-Resolution Portable Scanning Lidar for Extracting Structural Information

(2011) Fumiki Hosoi et al.   SENSORS

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Multispectral imaging system with interchangeable filter design

(2010) Michio Kise et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography

(2010) S. R. Tracy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Imaging and Analysis Platform for Automatic Phenotyping and Trait Ranking of Plant Root Systems

(2010) A. S. Iyer-Pascuzzi et al.   PLANT PHYSIOLOGY

Thermographic assessment of scab disease on apple leaves

(2010) E.-C. Oerke et al.   PRECISION AGRICULTURE

Noninvasive diagnosis of seed viability using infrared thermography

(2010) Ilse Kranner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant structure visualization by high-resolution X-ray computed tomography

(2010) Stijn Dhondt et al.   TRENDS IN PLANT SCIENCE

Acquisition of NIR-Green-Blue Digital Photographs from Unmanned Aircraft for Crop Monitoring

(2010) E. Raymond Hunt et al.   Remote Sensing

A new screening method for osmotic component of salinity tolerance in cereals using infrared thermography

(2009) Xavier R. R. Sirault et al.   FUNCTIONAL PLANT BIOLOGY

Foreword: Plant phenomics: from gene to form and function

(2009)   FUNCTIONAL PLANT BIOLOGY

Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field

(2009) Hamlyn G. Jones et al.   FUNCTIONAL PLANT BIOLOGY

Time-Delay-Integration Architectures in CMOS Image Sensors

(2009) GÉrald Lepage et al.   IEEE TRANSACTIONS ON ELECTRON DEVICES

Delayed fluorescence as a universal tool for the measurement of circadian rhythms in higher plants

(2009) Peter D. Gould et al.   PLANT JOURNAL

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY

Multispectral and hyperspectral remote sensing for identification and mapping of wetland vegetation: a review

(2009) Elhadi Adam et al.   WETLANDS ECOLOGY AND MANAGEMENT

On the relationships between stomatal resistance and leaf temperatures in thermography

(2008) L. Guilioni et al.   AGRICULTURAL AND FOREST METEOROLOGY

Speeded-Up Robust Features (SURF)

(2008) Herbert Bay et al.   COMPUTER VISION AND IMAGE UNDERSTANDING

A Real-Time Algorithm for the Approximation of Level-Set-Based Curve Evolution

(2008) Yonggang Shi et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Comparison of three satellite sensors at three spatial scales to predict larval mosquito presence in Connecticut wetlands

(2008) Heidi E. Brown et al.   REMOTE SENSING OF ENVIRONMENT

Effects of soil composition and mineralogy on remote sensing of crop residue cover

(2008) Guy Serbin et al.   REMOTE SENSING OF ENVIRONMENT