Future Scenarios for Plant Phenotyping

The quest for four-dimensional imaging in plant cell biology: it's just a matter of time

(2012) David S. Domozych   ANNALS OF BOTANY

Advanced phenotyping offers opportunities for improved breeding of forage and turf species

(2012) Achim Walter et al.   ANNALS OF BOTANY

Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components

(2012) Yogesh Mishra et al.   BMC PLANT BIOLOGY

A novel mesh processing based technique for 3D plant analysis

(2012) Anthony Paproki et al.   BMC PLANT BIOLOGY

GiA Roots: software for the high throughput analysis of plant root system architecture

(2012) Taras Galkovskyi et al.   BMC PLANT BIOLOGY

Imaging plants dynamics in heterogenic environments

(2012) Fabio Fiorani et al.   CURRENT OPINION IN BIOTECHNOLOGY

SPICY: towards automated phenotyping of large pepper plants in the greenhouse

(2012) Gerie van der Heijden et al.   FUNCTIONAL PLANT BIOLOGY

Pot size matters: a meta-analysis of the effects of rooting volume on plant growth

(2012) Hendrik Poorter et al.   FUNCTIONAL PLANT BIOLOGY

The art of growing plants for experimental purposes: a practical guide for the plant biologist

(2012) Hendrik Poorter et al.   FUNCTIONAL PLANT BIOLOGY

GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons

(2012) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography

(2012) R. J. Flavel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Traits and selection strategies to improve root systems and water uptake in water-limited wheat crops

(2012) A. P. Wasson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenotyping transgenic wheat for drought resistance

(2012) Carolina Saint Pierre et al.   JOURNAL OF EXPERIMENTAL BOTANY

Temperature responses of developmental processes have not been affected by breeding in different ecological areas for 17 crop species

(2012) Boris Parent et al.   NEW PHYTOLOGIST

Hyperspectral Imaging Techniques for Rapid Identification of Arabidopsis Mutants with Altered Leaf Pigment Status

(2012) Osamu Matsuda et al.   PLANT AND CELL PHYSIOLOGY

Analyzing Lateral Root Development: How to Move Forward

(2012) I. De Smet et al.   PLANT CELL

Surveying the plant’s world by magnetic resonance imaging

(2012) Ljudmilla Borisjuk et al.   PLANT JOURNAL

Applications of chlorophyll fluorescence imaging technique in horticultural research: A review

(2012) Elisa Gorbe et al.   SCIENTIA HORTICULTURAE

Computer Reconstruction of Plant Growth and Chlorophyll Fluorescence Emission in Three Spatial Dimensions

(2012) Chandra Bellasio et al.   SENSORS

Reconstruction and analysis of a deciduous sapling using digital photographs or terrestrial-LiDAR technology

(2011) Sylvain Delagrange et al.   ANNALS OF BOTANY

HTPheno: An image analysis pipeline for high-throughput plant phenotyping

(2011) Anja Hartmann et al.   BMC BIOINFORMATICS

PHENOPSIS DB: an Information System for Arabidopsis thaliana phenotypic data in an environmental context

(2011) Juliette Fabre et al.   BMC PLANT BIOLOGY

High throughput screening with chlorophyll fluorescence imaging and its use in crop improvement

(2011) Jeremy Harbinson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Drought tolerance through biotechnology: improving translation from the laboratory to farmers’ fields

(2011) Jill Deikman et al.   CURRENT OPINION IN BIOTECHNOLOGY

Non-invasive approaches for phenotyping of enhanced performance traits in bean

(2011) Uwe Rascher et al.   FUNCTIONAL PLANT BIOLOGY

Development of a novel semi-hydroponic phenotyping system for studying root architecture

(2011) Ying L. Chen et al.   FUNCTIONAL PLANT BIOLOGY

Irrigation control of cowpea plants using the measurement of leaf thickness under greenhouse conditions

(2011) Hans-Dieter Seelig et al.   IRRIGATION SCIENCE

Nuclear magnetic resonance: a tool for imaging belowground damage caused by Heterodera schachtii and Rhizoctonia solani on sugar beet

(2011) C. Hillnhutter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Any trait or trait-related allele can confer drought tolerance: just design the right drought scenario

(2011) F. Tardieu   JOURNAL OF EXPERIMENTAL BOTANY

Survival and growth of Arabidopsis plants given limited water are not equal

(2011) Aleksandra Skirycz et al.   NATURE BIOTECHNOLOGY

A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects

(2011) Samuel Arvidsson et al.   NEW PHYTOLOGIST

Vertical gradient in soil temperature stimulates development and increases biomass accumulation in barley

(2011) K. FÜLLNER et al.   PLANT CELL AND ENVIRONMENT

A novel machine-vision-based facility for the automatic evaluation of yield-related traits in rice

(2011) Lingfeng Duan et al.   Plant Methods

Accurate inference of shoot biomass from high-throughput images of cereal plants

(2011) Mahmood R Golzarian et al.   Plant Methods

Rapid analysis of seed size in Arabidopsis for mutant and QTL discovery

(2011) Rowan P Herridge et al.   Plant Methods

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

(2011) J. P. Cook et al.   PLANT PHYSIOLOGY

Visualizing the Genetic Landscape of Arabidopsis Seed Performance

(2011) R. V. L. Joosen et al.   PLANT PHYSIOLOGY

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean

(2011) Y.-T. Bolon et al.   PLANT PHYSIOLOGY

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

(2011) R. T. Clark et al.   PLANT PHYSIOLOGY

A Novel Image-Analysis Toolbox Enabling Quantitative Analysis of Root System Architecture

(2011) Guillaume Lobet et al.   PLANT PHYSIOLOGY

Root Phenes for Enhanced Soil Exploration and Phosphorus Acquisition: Tools for Future Crops

(2011) J. P. Lynch   PLANT PHYSIOLOGY

Fast-forward genetics enabled by new sequencing technologies

(2011) Korbinian Schneeberger et al.   TRENDS IN PLANT SCIENCE

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

Plant Disease Severity Estimated Visually, by Digital Photography and Image Analysis, and by Hyperspectral Imaging

(2010) C. H. Bock et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Why work and discuss the basic principles of plant modelling 50 years after the first plant models?

(2010) F. Tardieu   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput shoot imaging to study drought responses

(2010) B. Berger et al.   JOURNAL OF EXPERIMENTAL BOTANY

A method to construct dose–response curves for a wide range of environmental factors and plant traits by means of a meta-analysis of phenotypic data

(2010) Hendrik Poorter et al.   JOURNAL OF EXPERIMENTAL BOTANY

New phenotyping methods for screening wheat and barley for beneficial responses to water deficit

(2010) R. Munns et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phenomics: the next challenge

(2010) David Houle et al.   NATURE REVIEWS GENETICS

Remote sensing of plant functional types

(2010) Susan L. Ustin et al.   NEW PHYTOLOGIST

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

Probing the Reproducibility of Leaf Growth and Molecular Phenotypes: A Comparison of Three Arabidopsis Accessions Cultivated in Ten Laboratories

(2010) C. Massonnet et al.   PLANT PHYSIOLOGY

Imaging and Analysis Platform for Automatic Phenotyping and Trait Ranking of Plant Root Systems

(2010) A. S. Iyer-Pascuzzi et al.   PLANT PHYSIOLOGY

Future and frontiers of automated screening in plant sciences

(2010) Üner Kolukisaoglu et al.   PLANT SCIENCE

Breeding Technologies to Increase Crop Production in a Changing World

(2010) M. Tester et al.   SCIENCE

Precision Agriculture and Food Security

(2010) R. Gebbers et al.   SCIENCE

QTL analysis of seed germination and pre-emergence growth at extreme temperatures in Medicago truncatula

(2010) Paula Menna Barreto Dias et al.   THEORETICAL AND APPLIED GENETICS

Environmental Effects on Spatial and Temporal Patterns of Leaf and Root Growth

(2009) Achim Walter et al.   Annual Review of Plant Biology

Multi-sensor plant imaging: Towards the development of a stress-catalogue

(2009) Laury Chaerle et al.   Biotechnology Journal

Genome studies and molecular genetics—from sequence to crops: genomics comes of age

(2009) Masahiro Yano et al.   CURRENT OPINION IN PLANT BIOLOGY

Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance inArabidopsis thalianaand other rosette plants

(2009) Marcus Jansen et al.   FUNCTIONAL PLANT BIOLOGY

Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field

(2009) Hamlyn G. Jones et al.   FUNCTIONAL PLANT BIOLOGY

High throughput phenotyping of root growth dynamics, lateral root formation, root architecture and root hair development enabled by PlaRoM

(2009) Nima Yazdanbakhsh et al.   FUNCTIONAL PLANT BIOLOGY

Temperature responses of roots: impact on growth, root system architecture and implications for phenotyping

(2009) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

C4rice: a challenge for plant phenomics

(2009) Robert T. Furbank et al.   FUNCTIONAL PLANT BIOLOGY

Phenomics: the systematic study of phenotypes on a genome-wide scale

(2009) R.M. Bilder et al.   NEUROSCIENCE

DART: a software to analyse root system architecture and development from captured images

(2009) Jacques Le Bot et al.   PLANT AND SOIL

Non-invasive determination of plant biomass with microwave resonators

(2009) MARION I. MENZEL et al.   PLANT CELL AND ENVIRONMENT

3D reconstruction and dynamic modeling of root architecture in situ and its application to crop phosphorus research

(2009) Suqin Fang et al.   PLANT JOURNAL

Combined MRI-PET dissects dynamic changes in plant structures and functions

(2009) Siegfried Jahnke et al.   PLANT JOURNAL

germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination

(2009) Ronny V. L. Joosen et al.   PLANT JOURNAL

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY

Remote sensing of solar-induced chlorophyll fluorescence: Review of methods and applications

(2009) M. Meroni et al.   REMOTE SENSING OF ENVIRONMENT

Characterizing canopy biochemistry from imaging spectroscopy and its application to ecosystem studies

(2009) Raymond F. Kokaly et al.   REMOTE SENSING OF ENVIRONMENT

With ‘Phenomics,’ Plant Scientists Hope to Shift Breeding Into Overdrive

(2009) Elizabeth Finkel   SCIENCE

Chlorophyll Fluorescence: A Probe of Photosynthesis In Vivo

(2008) Neil R. Baker   Annual Review of Plant Biology

LAMINA: a tool for rapid quantification of leaf size and shape parameters

(2008) Max Bylesjö et al.   BMC PLANT BIOLOGY

The assessment of leaf water content using leaf reflectance ratios in the visible, near‐, and short‐wave‐infrared

(2008) H.‐D. Seelig et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

Rooting depth and water use efficiency of tropical maize inbred lines, differing in drought tolerance

(2008) Andreas Hund et al.   PLANT AND SOIL

Quantifying the three main components of salinity tolerance in cereals

(2008) KARTHIKA RAJENDRAN et al.   PLANT CELL AND ENVIRONMENT

Root decisions

(2008) ANGELA HODGE   PLANT CELL AND ENVIRONMENT

EZ-Rhizo: integrated software for the fast and accurate measurement of root system architecture

(2008) Patrick Armengaud et al.   PLANT JOURNAL

A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence

(2008) Nick S Woo et al.   Plant Methods

New Connections across Pathways and Cellular Processes: Industrialized Mutant Screening Reveals Novel Associations between Diverse Phenotypes in Arabidopsis

(2008) Y. Lu et al.   PLANT PHYSIOLOGY