A Review of Imaging Techniques for Plant Phenotyping

Ground-Based Digital Imaging as a Tool to Assess Soybean Growth and Yield

(2014) V. Hoyos-Villegas et al.   CROP SCIENCE

LiDAR based biomass and crop nitrogen estimates for rapid, non-destructive assessment of wheat nitrogen status

(2014) Jan U.H. Eitel et al.   FIELD CROPS RESEARCH

Quantitative dynamics of stem water soluble carbohydrates in wheat can be monitored in the field using hyperspectral reflectance

(2014) M. Fernanda Dreccer et al.   FIELD CROPS RESEARCH

Indoor and outdoor depth imaging of leaves with time-of-flight and stereo vision sensors: Analysis and comparison

(2014) Wajahat Kazmi et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

Root phenotyping by root tip detection and classification through statistical learning

(2014) Pankaj Kumar et al.   PLANT AND SOIL

Automated Analysis of Barley Organs Using 3D Laser Scanning: An Approach for High Throughput Phenotyping

(2014) Stefan Paulus et al.   SENSORS

Low-Cost 3D Systems: Suitable Tools for Plant Phenotyping

(2014) Stefan Paulus et al.   SENSORS

Development of a Mobile Multispectral Imaging Platform for Precise Field Phenotyping

(2014) Jesper Svensgaard et al.   Agronomy-Basel

Proximal Remote Sensing Buggies and Potential Applications for Field-Based Phenotyping

(2014) David Deery et al.   Agronomy-Basel

Evaluation of three proposed indices for the retrieval of leaf water content from the mid-wave infrared (2–6μm) spectra

(2013) Saleem Ullah et al.   AGRICULTURAL AND FOREST METEOROLOGY

Future Scenarios for Plant Phenotyping

(2013) Fabio Fiorani et al.   Annual Review of Plant Biology

Rice panicle length measuring system based on dual-camera imaging

(2013) Chenglong Huang et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Plant phenomics and high-throughput phenotyping: accelerating rice functional genomics using multidisciplinary technologies

(2013) Wanneng Yang et al.   CURRENT OPINION IN PLANT BIOLOGY

Image-based plant phenotyping with incremental learning and active contours

(2013) Massimo Minervini et al.   Ecological Informatics

Estimation of rice growth and nitrogen nutrition status using color digital camera image analysis

(2013) Kyu-Jong Lee et al.   EUROPEAN JOURNAL OF AGRONOMY

Development and evaluation of a field-based high-throughput phenotyping platform

(2013) Pedro Andrade-Sanchez et al.   FUNCTIONAL PLANT BIOLOGY

MRI of plants and foods

(2013) Henk Van As et al.   JOURNAL OF MAGNETIC RESONANCE

High throughput quantitative phenotyping of plant resistance using chlorophyll fluorescence image analysis

(2013) Céline Rousseau et al.   Plant Methods

Using high resolution UAV thermal imagery to assess the variability in the water status of five fruit tree species within a commercial orchard

(2013) V. Gonzalez-Dugo et al.   PRECISION AGRICULTURE

Hyperspectral remote sensing of plant biochemistry using Bayesian model averaging with variable and band selection

(2013) Kaiguang Zhao et al.   REMOTE SENSING OF ENVIRONMENT

Rapid Characterization of Vegetation Structure with a Microsoft Kinect Sensor

(2013) George Azzari et al.   SENSORS

BreedVision — A Multi-Sensor Platform for Non-Destructive Field-Based Phenotyping in Plant Breeding

(2013) Lucas Busemeyer et al.   SENSORS

Field high-throughput phenotyping: the new crop breeding frontier

(2013) José Luis Araus et al.   TRENDS IN PLANT SCIENCE

Advanced phenotyping offers opportunities for improved breeding of forage and turf species

(2012) Achim Walter et al.   ANNALS OF BOTANY

A novel mesh processing based technique for 3D plant analysis

(2012) Anthony Paproki et al.   BMC PLANT BIOLOGY

Hyperspectral detection of rice damaged by rice leaf folder (Cnaphalocrocis medinalis)

(2012) Jianrong Huang et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

On the use of depth camera for 3D phenotyping of entire plants

(2012) Yann Chéné et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Automatic inter-plant spacing sensing at early growth stages using a 3D vision sensor

(2012) A.D. Nakarmi et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Estimation of leaf water content in cotton by means of hyperspectral indices

(2012) Qiu-xiang Yi et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Field-based phenomics for plant genetics research

(2012) Jeffrey W. White et al.   FIELD CROPS RESEARCH

SPICY: towards automated phenotyping of large pepper plants in the greenhouse

(2012) Gerie van der Heijden et al.   FUNCTIONAL PLANT BIOLOGY

Pot size matters: a meta-analysis of the effects of rooting volume on plant growth

(2012) Hendrik Poorter et al.   FUNCTIONAL PLANT BIOLOGY

Data management pipeline for plant phenotyping in a multisite project

(2012) Kenny Billiau et al.   FUNCTIONAL PLANT BIOLOGY

A semi-automatic system for high throughput phenotyping wheat cultivars in-field conditions: description and first results

(2012) Alexis Comar et al.   FUNCTIONAL PLANT BIOLOGY

Early drought stress detection in cereals: simplex volume maximisation for hyperspectral image analysis

(2012) Christoph Römer et al.   FUNCTIONAL PLANT BIOLOGY

Phenotyping plants: genes, phenes and machines

(2012) Roland Pieruschka et al.   FUNCTIONAL PLANT BIOLOGY

GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons

(2012) Kerstin A. Nagel et al.   FUNCTIONAL PLANT BIOLOGY

Infrared Thermal Imaging as a Rapid Tool for Identifying Water-Stress Tolerant Maize Genotypes of Different Phenology

(2012) S. Zia et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Non-destructive quantification of cereal roots in soil using high-resolution X-ray tomography

(2012) R. J. Flavel et al.   JOURNAL OF EXPERIMENTAL BOTANY

Taking transgenic rice drought screening to the field

(2012) Amélie C. M. Gaudin et al.   JOURNAL OF EXPERIMENTAL BOTANY

High-throughput Phenotyping and Genomic Selection: The Frontiers of Crop Breeding ConvergeF

(2012) Llorenç Cabrera-Bosquet et al.   Journal of Integrative Plant Biology

Hyperspectral Imaging Techniques for Rapid Identification of Arabidopsis Mutants with Altered Leaf Pigment Status

(2012) Osamu Matsuda et al.   PLANT AND CELL PHYSIOLOGY

Rosette Tracker: An Open Source Image Analysis Tool for Automatic Quantification of Genotype Effects

(2012) J. De Vylder et al.   PLANT PHYSIOLOGY

Applications of chlorophyll fluorescence imaging technique in horticultural research: A review

(2012) Elisa Gorbe et al.   SCIENTIA HORTICULTURAE

Phenotyping maize for adaptation to drought

(2012) Jose L. Araus et al.   Frontiers in Physiology

Rapid Mapping of the Leaf Area Index in Agricultural Crops

(2011) Robin Gebbers et al.   AGRONOMY JOURNAL

Making Sense of Remotely Sensing Vegetation

(2011) Geoffrey M. Henebry   BIOSCIENCE

High-throughput phenotyping technology for maize roots

(2011) T.E. Grift et al.   BIOSYSTEMS ENGINEERING

HTPheno: An image analysis pipeline for high-throughput plant phenotyping

(2011) Anja Hartmann et al.   BMC BIOINFORMATICS

Genomic selection in plant breeding: from theory to practice

(2011) J.-L. Jannink et al.   Briefings in Functional Genomics

NDVI as a potential tool for predicting biomass, plant nitrogen content and growth in wheat genotypes subjected to different water and nitrogen conditions

(2011) L. Cabrera-Bosquet et al.   CEREAL RESEARCH COMMUNICATIONS

Robust fitting of fluorescence spectra for pre-symptomatic wheat leaf rust detection with Support Vector Machines

(2011) Christoph Römer et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

High throughput screening with chlorophyll fluorescence imaging and its use in crop improvement

(2011) Jeremy Harbinson et al.   CURRENT OPINION IN BIOTECHNOLOGY

Drought tolerance through biotechnology: improving translation from the laboratory to farmers’ fields

(2011) Jill Deikman et al.   CURRENT OPINION IN BIOTECHNOLOGY

High-throughput non-destructive biomass determination during early plant development in maize under field conditions

(2011) J.M. Montes et al.   FIELD CROPS RESEARCH

Non-invasive approaches for phenotyping of enhanced performance traits in bean

(2011) Uwe Rascher et al.   FUNCTIONAL PLANT BIOLOGY

Assessment of digital camera-derived vegetation indices in quantitative monitoring of seasonal rice growth

(2011) Toshihiro Sakamoto et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

Nuclear magnetic resonance: a tool for imaging belowground damage caused by Heterodera schachtii and Rhizoctonia solani on sugar beet

(2011) C. Hillnhutter et al.   JOURNAL OF EXPERIMENTAL BOTANY

Leaf optical properties reflect variation in photosynthetic metabolism and its sensitivity to temperature

(2011) Shawn P. Serbin et al.   JOURNAL OF EXPERIMENTAL BOTANY

A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects

(2011) Samuel Arvidsson et al.   NEW PHYTOLOGIST

Evaluation of cold stress of young industrial chicory (Cichorium intybus L.) by chlorophyll a fluorescence imaging. II. Dark relaxation kinetics

(2011) P. Lootens et al.   PHOTOSYNTHETICA

The use of PET/CT scanning technique for 3D visualization and quantification of real-time soil/plant interactions

(2011) Amin Garbout et al.   PLANT AND SOIL

Dynamic 13C/1H NMR imaging uncovers sugar allocation in the living seed

(2011) Gerd Melkus et al.   PLANT BIOTECHNOLOGY JOURNAL

A simple and efficient method for isolating small RNAs from different plant species

(2011) Flor de Fátima Rosas-Cárdenas et al.   Plant Methods

Accurate inference of shoot biomass from high-throughput images of cereal plants

(2011) Mahmood R Golzarian et al.   Plant Methods

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

(2011) J. P. Cook et al.   PLANT PHYSIOLOGY

Visualizing the Genetic Landscape of Arabidopsis Seed Performance

(2011) R. V. L. Joosen et al.   PLANT PHYSIOLOGY

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean

(2011) Y.-T. Bolon et al.   PLANT PHYSIOLOGY

Three-Dimensional Root Phenotyping with a Novel Imaging and Software Platform

(2011) R. T. Clark et al.   PLANT PHYSIOLOGY

Estimating Paddy Rice Leaf Area Index with Fixed Point Continuous Observation of Near Infrared Reflectance Using a Calibrated Digital Camera

(2011) Michio Shibayama et al.   PLANT PRODUCTION SCIENCE

Regression-Based Models to Predict Rice Leaf Area Index Using Biennial Fixed Point Continuous Observations of Near Infrared Digital Images

(2011) Michio Shibayama et al.   PLANT PRODUCTION SCIENCE

Engineered drought tolerance in tomato plants is reflected in chlorophyll fluorescence emission

(2011) Kumud Bandhu Mishra et al.   PLANT SCIENCE

Assessment of grape yield and composition using the reflectance based Water Index in Mediterranean rainfed vineyards

(2011) Lydia Serrano et al.   REMOTE SENSING OF ENVIRONMENT

High-throughput measurement of rice tillers using a conveyor equipped with x-ray computed tomography

(2011) Wanneng Yang et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Hyperspectral and Chlorophyll Fluorescence Imaging to Analyse the Impact of Fusarium culmorum on the Photosynthetic Integrity of Infected Wheat Ears

(2011) Elke Bauriegel et al.   SENSORS

Retrieval of leaf area index from top-of-canopy digital photography over agricultural crops

(2010) Jiangui Liu et al.   AGRICULTURAL AND FOREST METEOROLOGY

Three-dimensional digital model of a maize plant

(2010) Renato Prata de Moraes Frasson et al.   AGRICULTURAL AND FOREST METEOROLOGY

Analysis of rice panicle traits and detection of QTLs using an image analyzing method

(2010) Mayuko Ikeda et al.   BREEDING SCIENCE

Identification of insect-damaged wheat kernels using short-wave near-infrared hyperspectral and digital colour imaging

(2010) Chandra B. Singh et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Breeding for improved water productivity in temperate cereals: phenotyping, quantitative trait loci, markers and the selection environment

(2010) Richard A. Richards et al.   FUNCTIONAL PLANT BIOLOGY

Near-Infrared Reflectance Spectroscopy (NIRS) Assessment of δ18O and Nitrogen and Ash Contents for Improved Yield Potential and Drought Adaptation in Maize

(2010) Llorenç Cabrera-Bosquet et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

High-throughput shoot imaging to study drought responses

(2010) B. Berger et al.   JOURNAL OF EXPERIMENTAL BOTANY

The X-factor: visualizing undisturbed root architecture in soils using X-ray computed tomography

(2010) S. R. Tracy et al.   JOURNAL OF EXPERIMENTAL BOTANY

New phenotyping methods for screening wheat and barley for beneficial responses to water deficit

(2010) R. Munns et al.   JOURNAL OF EXPERIMENTAL BOTANY

Analytical model for long-distance tracer-transport in plants

(2010) Jonas Bühler et al.   JOURNAL OF THEORETICAL BIOLOGY

Discrimination of rice panicles by hyperspectral reflectance data based on principal component analysis and support vector classification

(2010) Zhan-yu Liu et al.   Journal of Zhejiang University-SCIENCE B

Sources of variability in canopy reflectance and the convergent properties of plants

(2010) S. V. Ollinger   NEW PHYTOLOGIST

SHORT-ROOT Regulates Primary, Lateral, and Adventitious Root Development in Arabidopsis

(2010) M. Lucas et al.   PLANT PHYSIOLOGY

Imaging and Analysis Platform for Automatic Phenotyping and Trait Ranking of Plant Root Systems

(2010) A. S. Iyer-Pascuzzi et al.   PLANT PHYSIOLOGY

Quantum yield of non-regulated energy dissipation in PSII (Y(NO)) for early detection of leaf rust (Puccinia triticina) infection in susceptible and resistant wheat (Triticum aestivum L.) cultivars

(2010) K. Bürling et al.   PRECISION AGRICULTURE

Chlorophyll fluorescence imaging of plant–pathogen interactions

(2010) Stephen Alexander Rolfe et al.   PROTOPLASMA

Spectroscopic determination of leaf water content using continuous wavelet analysis

(2010) T. Cheng et al.   REMOTE SENSING OF ENVIRONMENT

QTL analysis of seed germination and pre-emergence growth at extreme temperatures in Medicago truncatula

(2010) Paula Menna Barreto Dias et al.   THEORETICAL AND APPLIED GENETICS

Environmental Effects on Spatial and Temporal Patterns of Leaf and Root Growth

(2009) Achim Walter et al.   Annual Review of Plant Biology

Multi-sensor plant imaging: Towards the development of a stress-catalogue

(2009) Laury Chaerle et al.   Biotechnology Journal

High-Throughput Near-Infrared Reflectance Spectroscopy for Predicting Quantitative and Qualitative Composition Phenotypes of Individual Maize Kernels

(2009) Gertraud Spielbauer et al.   CEREAL CHEMISTRY

Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance inArabidopsis thalianaand other rosette plants

(2009) Marcus Jansen et al.   FUNCTIONAL PLANT BIOLOGY

Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field

(2009) Hamlyn G. Jones et al.   FUNCTIONAL PLANT BIOLOGY

Chlorophyll fluorescence imaging as tool for understanding the impact of fungal diseases on plant performance: a phenomics perspective

(2009) Julie D. Scholes et al.   FUNCTIONAL PLANT BIOLOGY

3D monitoring spatio–temporal effects of herbicide on a whole plant using combined range and chlorophyllafluorescence imaging

(2009) Atsumi Konishi et al.   FUNCTIONAL PLANT BIOLOGY

Corn plant sensing using real-time stereo vision

(2009) Jian Jin et al.   Journal of Field Robotics

Analysis of nickel concentration profiles around the roots of the hyperaccumulator plant Berkheya coddii using MRI and numerical simulations

(2009) A. B. Moradi et al.   PLANT AND SOIL

Non-invasive determination of plant biomass with microwave resonators

(2009) MARION I. MENZEL et al.   PLANT CELL AND ENVIRONMENT

3D reconstruction and dynamic modeling of root architecture in situ and its application to crop phosphorus research

(2009) Suqin Fang et al.   PLANT JOURNAL

Combined MRI-PET dissects dynamic changes in plant structures and functions

(2009) Siegfried Jahnke et al.   PLANT JOURNAL

germinator: a software package for high-throughput scoring and curve fitting of Arabidopsis seed germination

(2009) Ronny V. L. Joosen et al.   PLANT JOURNAL

Remote sensing of solar-induced chlorophyll fluorescence: Review of methods and applications

(2009) M. Meroni et al.   REMOTE SENSING OF ENVIRONMENT

Genetic Properties of the Maize Nested Association Mapping Population

(2009) M. D. McMullen et al.   SCIENCE

Chlorophyll Fluorescence: A Probe of Photosynthesis In Vivo

(2008) Neil R. Baker   Annual Review of Plant Biology

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

A tractor-mounted scanning LIDAR for the non-destructive measurement of vegetative volume and surface area of tree-row plantations: A comparison with conventional destructive measurements

(2008) Joan Ramon Rosell Polo et al.   BIOSYSTEMS ENGINEERING

The assessment of leaf water content using leaf reflectance ratios in the visible, near‐, and short‐wave‐infrared

(2008) H.‐D. Seelig et al.   INTERNATIONAL JOURNAL OF REMOTE SENSING

LAI and chlorophyll estimation for a heterogeneous grassland using hyperspectral measurements

(2008) Roshanak Darvishzadeh et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

Estimating vertical plant area density profile and growth parameters of a wheat canopy at different growth stages using three-dimensional portable lidar imaging

(2008) Fumiki Hosoi et al.   ISPRS JOURNAL OF PHOTOGRAMMETRY AND REMOTE SENSING

Thermal imaging to detect infestation by Cryptolestes ferrugineus inside wheat kernels

(2008) A. Manickavasagan et al.   JOURNAL OF STORED PRODUCTS RESEARCH

52Fe Translocation in Barley as Monitored by a Positron-Emitting Tracer Imaging System (PETIS): Evidence for the Direct Translocation of Fe from Roots to Young Leaves via Phloem

(2008) Takashi Tsukamoto et al.   PLANT AND CELL PHYSIOLOGY

Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and X-ray microtomography

(2008) Caroline E. Hargreaves et al.   PLANT AND SOIL

Quantifying the three main components of salinity tolerance in cereals

(2008) KARTHIKA RAJENDRAN et al.   PLANT CELL AND ENVIRONMENT

A rapid, non-invasive procedure for quantitative assessment of drought survival using chlorophyll fluorescence

(2008) Nick S Woo et al.   Plant Methods

Spatio-temporal variations of photosynthesis: the potential of optical remote sensing to better understand and scale light use efficiency and stresses of plant ecosystems

(2008) Uwe Rascher et al.   PRECISION AGRICULTURE

Spectral measurements of the total aerial N and biomass dry weight in maize using a quadrilateral-view optic

(2007) Bodo Mistele et al.   FIELD CROPS RESEARCH