Using Small RNA-seq Data to Detect siRNA Duplexes Induced by Plant Viruses

VirusDetect: An automated pipeline for efficient virus discovery using deep sequencing of small RNAs

(2017) Yi Zheng et al.   VIROLOGY

De novo sequencing transcriptome of endemic Gentiana straminea (Gentianaceae) to identify genes involved in the biosynthesis of active ingredients

(2016) Dangwei Zhou et al.   GENE

Using Small RNA Deep Sequencing Data to Detect Human Viruses

(2016) Fang Wang et al.   Biomed Research International

Generation of a de novo transcriptome from equine lamellar tissue

(2015) Heather M. Holl et al.   BMC GENOMICS

A Kelch domain-containing F-box coding gene negatively regulates flavonoid accumulation in Cucumis melo L.

(2015) Ari Feder et al.   PLANT PHYSIOLOGY

Transcriptome Responses of the Host Trichoplusia ni to Infection by the Baculovirus Autographa californica Multiple Nucleopolyhedrovirus

(2014) Y.-R. Chen et al.   JOURNAL OF VIROLOGY

Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress

(2013) Yanjie Xu et al.   BMC GENOMICS

Is RNA Interference a Physiologically Relevant Innate Antiviral Immune Response in Mammals?

(2013) Bryan R. Cullen et al.   Cell Host & Microbe

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions

(2012) Shaogui Guo et al.   NATURE GENETICS

Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation

(2012) Rugang Li et al.   PLoS One

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY