Using Small RNA Deep Sequencing Data to Detect Human Viruses

Deep Sequencing of Virus-Derived Small Interfering RNAs and RNA from Viral Particles Shows Highly Similar Mutational Landscapes of a Plant Virus Population

(2015) Denis Kutnjak et al.   JOURNAL OF VIROLOGY

The NOTCH pathway is recurrently mutated in diffuse large B-cell lymphoma associated with hepatitis C virus infection

(2014) L. Arcaini et al.   HAEMATOLOGICA

Clinical features and pathobiology of Ebolavirus infection

(2014) Aftab A. Ansari   JOURNAL OF AUTOIMMUNITY

EBV-positive diffuse large B-cell lymphoma of the elderly

(2013) C. Y. Ok et al.   BLOOD

The microenvironment of AIDS-related diffuse large B-cell lymphoma provides insight into the pathophysiology and indicates possible therapeutic strategies

(2013) K. Liapis et al.   BLOOD

Is RNA Interference a Physiologically Relevant Innate Antiviral Immune Response in Mammals?

(2013) Bryan R. Cullen et al.   Cell Host & Microbe

The role of lung dendritic cell subsets in immunity to respiratory viruses

(2013) Katrijn Neyt et al.   IMMUNOLOGICAL REVIEWS

RNA Interference Functions as an Antiviral Immunity Mechanism in Mammals

(2013) Y. Li et al.   SCIENCE

De novo sequencing of circulating miRNAs identifies novel markers predicting clinical outcome of locally advanced breast cancer

(2012) Xiwei Wu et al.   Journal of Translational Medicine

Global burden of cancers attributable to infections in 2008: a review and synthetic analysis

(2012) Catherine de Martel et al.   LANCET ONCOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation

(2012) Rugang Li et al.   PLoS One

Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses

(2011) Charles Hagen et al.   ARCHIVES OF VIROLOGY

Pathogen detection using short-RNA deep sequencing subtraction and assembly

(2011) O. Isakov et al.   BIOINFORMATICS

Identification of miRNomes in Human Liver and Hepatocellular Carcinoma Reveals miR-199a/b-3p as Therapeutic Target for Hepatocellular Carcinoma

(2011) Jin Hou et al.   CANCER CELL

A Viral Discovery Methodology for Clinical Biopsy Samples Utilising Massively Parallel Next Generation Sequencing

(2011) Gordon M. Daly et al.   PLoS One

Acute encephalopathy and encephalitis caused by influenza virus infection

(2010) Gefei F Wang et al.   CURRENT OPINION IN NEUROLOGY

Detection of EBV, HBV, HCV, HIV-1, HTLV-I and -II, and SMRV in Human and Other Primate Cell Lines

(2010) Cord C. Uphoff et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

The Sequence Read Archive

(2010) R. Leinonen et al.   NUCLEIC ACIDS RESEARCH

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs

(2010) Q. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Gastrointestinal Tract and AIDS Pathogenesis

(2009) Andrew A. Lackner et al.   GASTROENTEROLOGY

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

(2009) Jan F. Kreuze et al.   VIROLOGY

The curious case of the tumour virus: 50 years of Burkitt's lymphoma

(2008) David A. Thorley-Lawson et al.   NATURE REVIEWS MICROBIOLOGY

Small RNAs in viral infection and host defense

(2008) Sizolwenkosi Mlotshwa et al.   TRENDS IN PLANT SCIENCE