Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation
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Title
Deep Sequencing of Small RNAs in Tomato for Virus and Viroid Identification and Strain Differentiation
Authors
Keywords
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Journal
PLoS One
Volume 7, Issue 5, Pages e37127
Publisher
Public Library of Science (PLoS)
Online
2012-05-20
DOI
10.1371/journal.pone.0037127
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- First Report of Natural Infection of Greenhouse Tomatoes by Potato spindle tuber viroid in the United States
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- Next-generation sequencing and metagenomic analysis: a universal diagnostic tool in plant virology
- (2009) IAN P. ADAMS et al. MOLECULAR PLANT PATHOLOGY
- Pepino mosaic virus: a successful pathogen that rapidly evolved from emerging to endemic in tomato crops
- (2009) INGE M. HANSSEN et al. MOLECULAR PLANT PATHOLOGY
- First Report of a Natural Infection by Mexican Papita Viroid and Tomato Chlorotic Dwarf Viroid on Greenhouse Tomatoes in Mexico
- (2009) K.-S. Ling et al. PLANT DISEASE
- First Report of Mexican papita viroid Infecting Greenhouse Tomato in Canada
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- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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