Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress

Next-Generation Sequencing of the Chrysanthemum nankingense (Asteraceae) Transcriptome Permits Large-Scale Unigene Assembly and SSR Marker Discovery

(2013) Haibin Wang et al.   PLoS One

Transcriptome sequencing of Eucalyptus camaldulensis seedlings subjected to water stress reveals functional single nucleotide polymorphisms and genes under selection

(2012) Bala R Thumma et al.   BMC GENOMICS

Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant, Chorispora bungeana

(2012) Zhiguang Zhao et al.   BMC PLANT BIOLOGY

The constitutive expression of Chrysanthemum dichrum ICE1 in Chrysanthemum grandiflorum improves the level of low temperature, salinity and drought tolerance

(2012) Lin Chen et al.   PLANT CELL REPORTS

The Impact of Global Change Factors on Redox Signaling Underpinning Stress Tolerance

(2012) S. Munne-Bosch et al.   PLANT PHYSIOLOGY

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor

(2012) J. M. Gendron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana

(2012) C.-M. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional machineries in jasmonate-elicited plant secondary metabolism

(2012) Nathan De Geyter et al.   TRENDS IN PLANT SCIENCE

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

(2011) Yi Zheng et al.   BMC BIOINFORMATICS

Drought, metabolites, and Arabidopsis natural variation: a promising combination for understanding adaptation to water-limited environments

(2011) Paul E Verslues et al.   CURRENT OPINION IN PLANT BIOLOGY

Hormone balance and abiotic stress tolerance in crop plants

(2011) Zvi Peleg et al.   CURRENT OPINION IN PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Essential Role of Tissue-Specific Proline Synthesis and Catabolism in Growth and Redox Balance at Low Water Potential

(2011) Sandeep Sharma et al.   PLANT PHYSIOLOGY

Mitogen-Activated Protein Kinase Signaling in Plants

(2010) Maria Cristina et al.   Annual Review of Plant Biology

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato

(2010) Pengjuan Gong et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative analysis of drought-responsive transcriptome in Indica rice genotypes with contrasting drought tolerance

(2010) Sangram K. Lenka et al.   PLANT BIOTECHNOLOGY JOURNAL

Understanding Oxidative Stress and Antioxidant Functions to Enhance Photosynthesis

(2010) C. H. Foyer et al.   PLANT PHYSIOLOGY

Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana

(2010) D. C. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data

(2009) M. Morgan et al.   BIOINFORMATICS

TOC1 functions as a molecular switch connecting the circadian clock with plant responses to drought

(2009) Tommaso Legnaioli et al.   EMBO JOURNAL

Over-expression of AtDREB1A in chrysanthemum enhances tolerance to heat stress

(2009) Bo Hong et al.   PLANT MOLECULAR BIOLOGY

Plant MetGenMAP: An Integrative Analysis System for Plant Systems Biology

(2009) J.-G. Joung et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Gibberellin Metabolism and its Regulation

(2008) Shinjiro Yamaguchi   Annual Review of Plant Biology

Self/nonself perception and recognition mechanisms in plants: a comparison of self-incompatibility and innate immunity

(2008) Natasha Sanabria et al.   NEW PHYTOLOGIST

The Arabidopsis NFYA5 Transcription Factor Is Regulated Transcriptionally and Posttranscriptionally to Promote Drought Resistance

(2008) W.-X. Li et al.   PLANT CELL