Development of Chloroplast and Nuclear DNA Markers for Chinese Oaks (Quercus Subgenus Quercus) and Assessment of Their Utility as DNA Barcodes

Leaf epidermal features of Quercus Group Ilex (Fagaceae) and their application to species identification

(2017) Min Deng et al.   REVIEW OF PALAEOBOTANY AND PALYNOLOGY

Phylogeography and evolution of two closely related oak species (Quercus) from north and northeast China

(2016) Jia Yang et al.   Tree Genetics & Genomes

Genetic Structure and Evolutionary History of Three Alpine Sclerophyllous Oaks in East Himalaya-Hengduan Mountains and Adjacent Regions

(2016) Li Feng et al.   Frontiers in Plant Science

Comparative Analysis of the Complete Chloroplast Genomes of Five Quercus Species

(2016) Yanci Yang et al.   Frontiers in Plant Science

Plastome data reveal multiple geographic origins ofQuercusGroup Ilex

(2016) Marco Cosimo Simeone et al.   PeerJ

Comparative Pollen Morphological Analysis and Its Systematic Implications on Three European Oak (Quercus L., Fagaceae) Species and Their Spontaneous Hybrids

(2016) Dorota Wrońska-Pilarek et al.   PLoS One

Phylogeography of the temperate tree species Quercus acutissima in China: Inferences from chloroplast DNA variations

(2015) Xingwang Zhang et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Phylogeny and biogeography of the American live oaks (QuercussubsectionVirentes): a genomic and population genetics approach

(2015) Jeannine Cavender-Bares et al.   MOLECULAR ECOLOGY

Multiple glacial refugia for cool-temperate deciduous trees in northern East Asia: the Mongolian oak as a case study

(2015) Yan-Fei Zeng et al.   MOLECULAR ECOLOGY

DNA Barcoding of Rhodiola (Crassulaceae): A Case Study on a Group of Recently Diversified Medicinal Plants from the Qinghai-Tibetan Plateau

(2015) Jian-Qiang Zhang et al.   PLoS One

ycf1, the most promising plastid DNA barcode of land plants

(2015) Wenpan Dong et al.   Scientific Reports

Why are most organelle genomes transmitted maternally?

(2014) Stephan Greiner et al.   BIOESSAYS

Plant DNA barcoding: from gene to genome

(2014) Xiwen Li et al.   BIOLOGICAL REVIEWS

Pollen morphology and ultrastructure ofQuercuswith focus on Group Ilex (=QuercussubgenusHeterobalanus(Oerst.) Menitsky): implications for oak systematics and evolution

(2014) Thomas Denk et al.   GRANA

Molecular taxonomic identification in the absence of a ‘barcoding gap’: a test with the endemic flora of the Canarian oceanic hotspot

(2014) Ruth Jaén-Molina et al.   Molecular Ecology Resources

ITS1: a DNA barcode better than ITS2 in eukaryotes?

(2014) Xin-Cun Wang et al.   Molecular Ecology Resources

Testing DNA barcodes in closely related species ofCurcuma(Zingiberaceae) from Myanmar and China

(2014) Juan Chen et al.   Molecular Ecology Resources

Identification of species in the angiosperm family Apiaceae using DNA barcodes

(2014) Jinxin Liu et al.   Molecular Ecology Resources

DNA barcoding ofRhododendron(Ericaceae), the largest Chinese plant genus in biodiversity hotspots of the Himalaya-Hengduan Mountains

(2014) Li-Jun Yan et al.   Molecular Ecology Resources

Multiple nuclear genes stabilize the phylogenetic backbone of the genusQuercus

(2014) François Hubert et al.   SYSTEMATICS AND BIODIVERSITY

Pyrosequencing of the northern red oak (Quercus rubra L.) chloroplast genome reveals high quality polymorphisms for population management

(2014) Lisa W. Alexander et al.   Tree Genetics & Genomes

Primers for 52 polymorphic regions in the Quercus rubra chloroplast, 47 of which amplify across 11 tracheophyte clades

(2014) Daniel S. Borkowski et al.   Tree Genetics & Genomes

Application of plastid and nuclear markers to DNA barcoding of Euro-Mediterranean oaks (Quercus, Fagaceae): problems, prospects and phylogenetic implications

(2013) Marco C. Simeone et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

BLOG 2.0: a software system for character-based species classification with DNA Barcode sequences. What it does, how to use it

(2013) Emanuel Weitschek et al.   Molecular Ecology Resources

Restricted variation in plant barcoding markers limits identification in closely related bryophyte species

(2013) Kristian Hassel et al.   Molecular Ecology Resources

Cryptic or mystic? Glacial tree refugia in northern Europe

(2013) P.C. Tzedakis et al.   TRENDS IN ECOLOGY & EVOLUTION

A critical review on the utility of DNA barcoding in biodiversity conservation

(2012) P. Krishna Krishnamurthy et al.   BIODIVERSITY AND CONSERVATION

Genetic consequences of glacial survival: the late Quaternary history of balsam poplar (Populus balsamifera L.) in North America

(2012) Amy L. Breen et al.   JOURNAL OF BIOGEOGRAPHY

An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding

(2012) H. R. TAYLOR et al.   Molecular Ecology Resources

Plant DNA barcodes and the influence of gene flow

(2012) YAMAMA NACIRI et al.   Molecular Ecology Resources

DNA Barcoding of Recently Diverged Species: Relative Performance of Matching Methods

(2012) Robin van Velzen et al.   PLoS One

Highly Variable Chloroplast Markers for Evaluating Plant Phylogeny at Low Taxonomic Levels and for DNA Barcoding

(2012) Wenpan Dong et al.   PLoS One

Phylogeography of Quercus variabilis Based on Chloroplast DNA Sequence in East Asia: Multiple Glacial Refugia and Mainland-Migrated Island Populations

(2012) Dongmei Chen et al.   PLoS One

Genomics of Fagaceae

(2012) Antoine Kremer et al.   Tree Genetics & Genomes

Chloroplast phylogeography of a temperate treePteroceltis tatarinowii(Ulmaceae) in China

(2012) Xiao-Hong LI et al.   Journal of Systematics and Evolution

Phylogeographic studies of plants in China: Advances in the past and directions in the future

(2012) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Phylogeography and climatic niche evolution in live oaks (Quercus series Virentes) from the tropics to the temperate zone

(2011) Jeannine Cavender-Bares et al.   JOURNAL OF BIOGEOGRAPHY

ABGD, Automatic Barcode Gap Discovery for primary species delimitation

(2011) N. PUILLANDRE et al.   MOLECULAR ECOLOGY

Geographic variation in the structure of oak hybrid zones provides insights into the dynamics of speciation

(2011) YAN-FEI ZENG et al.   MOLECULAR ECOLOGY

Testing DNA barcoding in closely related groups of Lysimachia L. (Myrsinaceae)

(2011) CAI-YUN ZHANG et al.   Molecular Ecology Resources

Evaluation of candidate DNA barcoding loci for economically important timber species of the mahogany family (Meliaceae)

(2011) A.N. MUELLNER et al.   Molecular Ecology Resources

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Choosing and Using a Plant DNA Barcode

(2011) Peter M. Hollingsworth et al.   PLoS One

Comparing the Usefulness of Distance, Monophyly and Character-Based DNA Barcoding Methods in Species Identification: A Case Study of Neogastropoda

(2011) Shanmei Zou et al.   PLoS One

Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants

(2011) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are nuclear loci ideal for barcoding plants? A case study of genetic delimitation of two sister species using multiple loci and multiple intraspecific individuals

(2011) Qian WANG et al.   Journal of Systematics and Evolution

Applying plant DNA barcodes for Rosaceae species identification

(2010) Xiaohui Pang et al.   CLADISTICS

A Test of Seven Candidate Barcode Regions from the Plastome in Picea (Pinaceae)

(2010) Jin-Hua Ran et al.   Journal of Integrative Plant Biology

Complete Plastid Genome Sequences of Three Rosids (Castanea, Prunus, Theobroma): Evidence for At Least Two Independent Transfers of rpl22 to the Nucleus

(2010) R. K. Jansen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-enabled development of DNA markers for ecology, evolution and conservation

(2010) ROBERT C. THOMSON et al.   MOLECULAR ECOLOGY

Prospects of barcoding the Italian wild dendroflora: oaks reveal severe limitations to tracking species identity

(2010) ROBERTA PIREDDA et al.   Molecular Ecology Resources

DNA barcoding for the discrimination of Eurasian yews (Taxus L., Taxaceae) and the discovery of cryptic species

(2010) JIE LIU et al.   Molecular Ecology Resources

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Learning to classify species with barcodes

(2009) Paola Bertolazzi et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Significance of Pollen Characteristics for Infrageneric Classification and Phylogeny in Quercus (Fagaceae)

(2009) Thomas Denk et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A DNA barcode for land plants

(2009) et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Climatic envelope of evergreen sclerophyllous oaks and their present distribution in the eastern Himalaya and Hengduan Mountains

(2009) Qing-Song YANG et al.   Journal of Systematics and Evolution

Phylogenetic utility of ycf1 in orchids: a plastid gene more variable than matK

(2008) Kurt M. Neubig et al.   PLANT SYSTEMATICS AND EVOLUTION