Phylogeographic studies of plants in China: Advances in the past and directions in the future

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Out of the Qinghai-Tibet Plateau: evidence for the origin and dispersal of Eurasian temperate plants from a phylogeographic study of Hippophaë rhamnoides (Elaeagnaceae)

(2012) Dong-Rui Jia et al.   NEW PHYTOLOGIST

Glacial Survival of Boreal Trees in Northern Scandinavia

(2012) L. Parducci et al.   SCIENCE

Human Evolution Out of Africa: The Role of Refugia and Climate Change

(2012) J. R. Stewart et al.   SCIENCE

Identifying a contact zone between two phylogeographic lineages ofClematis sibirica(Ranunculeae) in the Tianshan and Altai Mountains

(2012) Hong-Xiang ZHANG et al.   Journal of Systematics and Evolution

Phylogeography ofCyananthus delavayi(Campanulaceae) in Hengduan Mountains inferred from variation in nuclear and chloroplast DNA sequences

(2012) Guo-Dong LI et al.   Journal of Systematics and Evolution

Phylogeography of an alpine plantLigularia vellerea(Asteraceae) in the Hengduan Mountains

(2012) Zhi-Yun YANG et al.   Journal of Systematics and Evolution

Response of a desert shrub to past geological and climatic change: A phylogeographic study ofReaumuria soongarica(Tamaricaceae) in western China

(2012) Zhong-Hu LI et al.   Journal of Systematics and Evolution

Geographic variation of chloroplast DNA inPlatycarya strobilacea(Juglandaceae)

(2012) Shi-Chao CHEN et al.   Journal of Systematics and Evolution

Chloroplast phylogeography of a temperate treePteroceltis tatarinowii(Ulmaceae) in China

(2012) Xiao-Hong LI et al.   Journal of Systematics and Evolution

Phylogeography ofSpiraea alpina(Rosaceae) in the Qinghai-Tibetan Plateau inferred from chloroplast DNA sequence variations

(2012) Fa-Qi ZHANG et al.   Journal of Systematics and Evolution

Phylogeographic analyses ofPhragmites australisin China: Native distribution and habitat preference of the haplotype that invaded North America

(2012) Jia-Xing AN et al.   Journal of Systematics and Evolution

Chloroplast DNA phylogeography ofPrimula ovalifoliain central and adjacent southwestern China: Past gradual expansion and geographical isolation

(2012) Xiu-Feng XIE et al.   Journal of Systematics and Evolution

Phylogeographic analysis and environmental niche modeling of widespread shrubRhododendron simsiiin China reveals multiple glacial refugia during the last glacial maximum

(2012) Yong LI et al.   Journal of Systematics and Evolution

Molecular phylogeography and evolutionary history ofPicea likiangensisin the Qinghai-Tibetan Plateau inferred from mitochondrial and chloroplast DNA sequence variation

(2012) Jia-Bin ZOU et al.   Journal of Systematics and Evolution

Phylogeographic analysis of the fir species in southern China suggests complex origin and genetic admixture

(2011) Yanling Peng et al.   ANNALS OF FOREST SCIENCE

POPULATION GENETIC EVIDENCE FOR COMPLEX EVOLUTIONARY HISTORIES OF FOUR HIGH ALTITUDE JUNIPER SPECIES IN THE QINGHAI-TIBETAN PLATEAU

(2011) Zhonghu Li et al.   EVOLUTION

Joint Inference of Population Assignment and Demographic History

(2011) Sang Chul Choi et al.   GENETICS

Refugia: identifying and understanding safe havens for biodiversity under climate change

(2011) Gunnar Keppel et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Genetic divergence, range expansion and possible homoploid hybrid speciation among pine species in Northeast China

(2011) G-P Ren et al.   HEREDITY

Geographic variation in the structure of oak hybrid zones provides insights into the dynamics of speciation

(2011) YAN-FEI ZENG et al.   MOLECULAR ECOLOGY

Glacial survival east and west of the ‘Mekong–Salween Divide’ in the Himalaya–Hengduan Mountains region as revealed by AFLPs and cpDNA sequence variation in Sinopodophyllum hexandrum (Berberidaceae)

(2011) Yong Li et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Plant molecular phylogeography in China and adjacent regions: Tracing the genetic imprints of Quaternary climate and environmental change in the world’s most diverse temperate flora

(2011) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Direction and extent of organelle DNA introgression between two spruce species in the Qinghai-Tibetan Plateau

(2011) Fang K. Du et al.   NEW PHYTOLOGIST

Phylogeography of Potentilla fruticosa (Rosaceae) in the Qinghai-Tibetan Plateau revisited: a reappraisal and new insights

(2011) Yong-Shuai Sun et al.   Plant Ecology & Diversity

Genetic Differentiation and Delimitation between Ecologically Diverged Populus euphratica and P. pruinosa

(2011) Juan Wang et al.   PLoS One

Genetic structure and phylogeography of a relict tree fern, Sphaeropteris brunoniana (Cyatheaceae) from China and Laos inferred from cpDNA sequence variations: Implications for conservation

(2011) Zi-Juan WANG et al.   Journal of Systematics and Evolution

Chloroplast DNA variation and phylogeography ofLigularia tongolensis(Asteraceae), a species endemic to the Hengduan Mountains region of China

(2011) Jin-Feng WANG et al.   Journal of Systematics and Evolution

Population differentiation and phylogeographic pattern of a relict species, Conandron ramondioides (Gesneriaceae), revealed from sequence polymorphism and haplotypes of the CYCLOIDEA gene

(2011) Li-Hong XIAO et al.   Journal of Systematics and Evolution

Are nuclear loci ideal for barcoding plants? A case study of genetic delimitation of two sister species using multiple loci and multiple intraspecific individuals

(2011) Qian WANG et al.   Journal of Systematics and Evolution

Divergence with Gene Flow: Models and Data

(2010) Catarina Pinho et al.   Annual Review of Ecology Evolution and Systematics

Approximate Bayesian Computation in Evolution and Ecology

(2010) Mark A. Beaumont   Annual Review of Ecology Evolution and Systematics

Evolutionary history of an alpine shrub Hippophae tibetana (Elaeagnaceae): allopatric divergence and regional expansion

(2010) DONG-RUI JIA et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

ABCtoolbox: a versatile toolkit for approximate Bayesian computations

(2010) Daniel Wegmann et al.   BMC BIOINFORMATICS

Phylogeography and allopatric divergence of cypress species (Cupressus L.) in the Qinghai-Tibetan Plateau and adjacent regions

(2010) Tingting Xu et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time

(2010) P. Lemey et al.   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of the Demographic History of Chimpanzees

(2010) D. Wegmann et al.   MOLECULAR BIOLOGY AND EVOLUTION

In defence of model-based inference in phylogeography

(2010) MARK A. BEAUMONT et al.   MOLECULAR ECOLOGY

Multiple autopolyploidizations and range expansion ofAllium przewalskianumRegel. (Alliaceae) in the Qinghai-Tibetan Plateau

(2010) LI-LI WU et al.   MOLECULAR ECOLOGY

Coalescent-based, maximum likelihood inference in phylogeography

(2010) ALAN R. TEMPLETON   MOLECULAR ECOLOGY

Plant recolonization in the Himalaya from the southeastern Qinghai-Tibetan Plateau: Geographical isolation contributed to high population differentiation

(2010) Yu-Zhi Cun et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Nuclear and chloroplast DNA phylogeography reveal two refuge areas with asymmetrical gene flow in a temperate walnut tree from East Asia

(2010) Wei-Ning Bai et al.   NEW PHYTOLOGIST

Three roads diverged? Routes to phylogeographic inference

(2010) Erik W. Bloomquist et al.   TRENDS IN ECOLOGY & EVOLUTION

Hypothesis testing in biogeography

(2010) Michael D. Crisp et al.   TRENDS IN ECOLOGY & EVOLUTION

Allopatric divergence and regional range expansion of Juniperus sabina in China

(2010) Yu-Peng GUO et al.   Journal of Systematics and Evolution

Statistical Phylogeography

(2009) L. Lacey Knowles   Annual Review of Ecology Evolution and Systematics

STEM: species tree estimation using maximum likelihood for gene trees under coalescence

(2009) Laura S. Kubatko et al.   BIOINFORMATICS

Refugia within refugia: the case study of a canopy tree (Eurycorymbus cavaleriei) in subtropical China

(2009) Jing Wang et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeographic analyses suggest that a deciduous species (Ostryopsis davidianaDecne., Betulaceae) survived in northern China during the Last Glacial Maximum

(2009) Bin Tian et al.   JOURNAL OF BIOGEOGRAPHY

Demographic histories of four spruce (Picea) species of the Qinghai-Tibetan Plateau and neighboring areas inferred from multiple nuclear loci

(2009) Yuan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation with Migration Models for More Than Two Populations

(2009) Jody Hey   MOLECULAR BIOLOGY AND EVOLUTION

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

More introgression with less gene flow: chloroplast vs. mitochondrial DNA in thePicea asperatacomplex in China, and comparison with other Conifers

(2009) FANG K. DU et al.   MOLECULAR ECOLOGY

History and evolution of alpine plants endemic to the Qinghai-Tibetan Plateau:Aconitum gymnandrum(Ranunculaceae)

(2009) LIUYANG WANG et al.   MOLECULAR ECOLOGY

Statistical inferences in phylogeography

(2009) RASMUS NIELSEN et al.   MOLECULAR ECOLOGY

Did glacials and/or interglacials promote allopatric incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analyses on refugial isolation and divergence in Dysosma versipellis

(2009) Ying-Xiong Qiu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Coalescent methods for estimating phylogenetic trees

(2009) Liang Liu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Molecular phylogeography of East Asian Kirengeshoma (Hydrangeaceae) in relation to Quaternary climate change and landbridge configurations

(2009) Ying-Xiong Qiu et al.   NEW PHYTOLOGIST

Tree endurance on the Tibetan Plateau marks the world’s highest known tree line of the Last Glacial Maximum

(2009) Lars Opgenoorth et al.   NEW PHYTOLOGIST

Alpines, trees, and refugia in Europe

(2009) H. John B. Birks et al.   Plant Ecology & Diversity

Refugia revisited: individualistic responses of species in space and time

(2009) J. R. Stewart et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bayesian Phylogeography Finds Its Roots

(2009) Philippe Lemey et al.   PLoS Computational Biology

Bayesian inference of population size history from multiple loci

(2008) Joseph Heled et al.   BMC EVOLUTIONARY BIOLOGY

Potential refugium on the Qinghai–Tibet Plateau revealed by the chloroplast DNA phylogeography of the alpine species Metagentiana striata (Gentianaceae)

(2008) SHENGYUN CHEN et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogeography: retrospect and prospect

(2008) John C. Avise   JOURNAL OF BIOGEOGRAPHY

Chloroplast phylogeography of Dipentodon (Dipentodontaceae) in southwest China and northern Vietnam

(2008) QING-JUN YUAN et al.   MOLECULAR ECOLOGY

Nested clade analysis: an extensively validated method for strong phylogeographic inference

(2008) ALAN R. TEMPLETON   MOLECULAR ECOLOGY

Phylogeography ofPinus tabulaeformisCarr. (Pinaceae), a dominant species of coniferous forest in northern China

(2008) KANGMING CHEN et al.   MOLECULAR ECOLOGY

Extensive population expansion ofPedicularis longiflora(Orobanchaceae) on the Qinghai-Tibetan Plateau and its correlation with the Quaternary climate change

(2008) FU-SHENG YANG et al.   MOLECULAR ECOLOGY

Coalescent genealogy samplers: windows into population history

(2008) Mary K. Kuhner   TRENDS IN ECOLOGY & EVOLUTION