Analysis of single root tip microbiomes suggests that distinctive bacterial communities are selected by P inus sylvestris roots colonized by different ectomycorrhizal fungi

The Microbiome of Pinus muricata Ectomycorrhizae: Community Assemblages, Fungal Species Effects, and Burkholderia as Important Bacteria in Multipartnered Symbioses

(2015) Nhu H. Nguyen et al.   MICROBIAL ECOLOGY

Changes in fungal communities along a boreal forest soil fertility gradient

(2015) Erica Sterkenburg et al.   NEW PHYTOLOGIST

Carbon sequestration is related to mycorrhizal fungal community shifts during long-term succession in boreal forests

(2014) Karina E. Clemmensen et al.   NEW PHYTOLOGIST

Influence of Soil Type, Cultivar and Verticillium dahliae on the Structure of the Root and Rhizosphere Soil Fungal Microbiome of Strawberry

(2014) Srivathsa Nallanchakravarthula et al.   PLoS One

Burkholderia terrae BS001 migrates proficiently with diverse fungal hosts through soil and provides protection from antifungal agents

(2014) Rashid Nazir et al.   Frontiers in Microbiology

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Increased hyphal branching and growth of ectomycorrhizal fungus Lactarius rufus by the helper bacterium Paenibacillus sp

(2013) T. J. Aspray et al.   MYCORRHIZA

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Different bacterial communities in ectomycorrhizae and surrounding soil

(2013) Unni Vik et al.   Scientific Reports

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2012) S. Uroz et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

(2012) C. Lepleux et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Production of fungal and bacterial growth modulating secondary metabolites is widespread among mycorrhiza-associated streptomycetes

(2012) Silvia D Schrey et al.   BMC MICROBIOLOGY

Suillus mycelia under elevated atmospheric CO2 support increased bacterial communities and scarce nifH gene activity in contrast to Hebeloma mycelia

(2012) Hironari Izumi et al.   MYCORRHIZA

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

The capacity to comigrate with Lyophyllum sp. strain Karsten through different soils is spread among several phylogenetic groups within the genus Burkholderia

(2012) Rashid Nazir et al.   SOIL BIOLOGY & BIOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions

(2011) Stefano Ghignone et al.   ISME Journal

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

(2011) Stéphane Uroz et al.   RESEARCH IN MICROBIOLOGY

Long term impact of mineral amendment on the distribution of the mineral weathering associated bacterial communities from the beech Scleroderma citrinum ectomycorrhizosphere

(2011) S. Uroz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ectomycorrhizal roots select distinctive bacterial and ascomycete communities in Swedish subarctic forests

(2010) Hironari Izumi et al.   ENVIRONMENTAL MICROBIOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hitchhikers on the fungal highway: The helper effect for bacterial migration via fungal hyphae

(2010) J.A. Warmink et al.   SOIL BIOLOGY & BIOCHEMISTRY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Plants, Mycorrhizal Fungi, and Bacteria: A Network of Interactions

(2009) Paola Bonfante et al.   Annual Review of Microbiology

Selection of Sphingomonadaceae at the Base of Laccaria proxima and Russula exalbicans Fruiting Bodies

(2009) F. G. H. Boersma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Migratory Response of Soil Bacteria to Lyophyllum sp. Strain Karsten in Soil Microcosms

(2009) J. A. Warmink et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic diversity of non-nodulating Rhizobium  associated with pine ectomycorrhizae

(2009) Megumi Tanaka et al.   FEMS MICROBIOLOGY ECOLOGY

Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats

(2009) Rashid Nazir et al.   FEMS MICROBIOLOGY ECOLOGY

Quantitative analysis of soluble exudates produced by ectomycorrhizal roots as a response to ambient and elevated CO2

(2009) Emma M. Johansson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Mineral weathering by bacteria: ecology, actors and mechanisms

(2009) Stéphane Uroz et al.   TRENDS IN MICROBIOLOGY

Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi

(2008) J. A. Warmink et al.   ENVIRONMENTAL MICROBIOLOGY

Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi

(2008) David J. Burke et al.   FEMS MICROBIOLOGY ECOLOGY

Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south-eastern Queensland, Australia

(2008) Hironari Izumi et al.   FEMS MICROBIOLOGY LETTERS

Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved?

(2008) Jan Aaldrik Warmink et al.   ISME Journal

Quantitative analysis of root and ectomycorrhizal exudates as a response to Pb, Cd and As stress

(2008) Emma M. Johansson et al.   PLANT AND SOIL

Comparison of the bacterial communities established on the mycorrhizae formed on Pinus thunbergii root tips by eight species of fungi

(2008) Ryota Kataoka et al.   PLANT AND SOIL

Quantitative analysis of exudates from soil-living basidiomycetes in pure culture as a response to lead, cadmium and arsenic stress

(2008) Emma M. Johansson et al.   SOIL BIOLOGY & BIOCHEMISTRY