Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

Increasing phytoremediation efficiency and reliability using novel omics approaches

(2014) Terrence H. Bell et al.   TRENDS IN BIOTECHNOLOGY

Identification of soil bacteria able to degrade phenanthrene bound to a hydrophobic sorbent in situ

(2013) Raïssa Kom Regonne et al.   ENVIRONMENTAL POLLUTION

Bioremediation of petroleum-contaminated soil by a combined system of biostimulation–bioaugmentation with yeast

(2013) Mei-Ying Fan et al.   ENVIRONMENTAL TECHNOLOGY

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

(2013) Terrence H Bell et al.   ISME Journal

Robust estimation of microbial diversity in theory and in practice

(2013) Bart Haegeman et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

Necrophytoremediation of phenanthrene and pyrene in contaminated soil

(2013) Esmaeil Shahsavari et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Competition sensing: the social side of bacterial stress responses

(2013) Daniel M. Cornforth et al.   NATURE REVIEWS MICROBIOLOGY

Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure

(2012) Nora B. Sutton et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Competition, Not Cooperation, Dominates Interactions among Culturable Microbial Species

(2012) Kevin R. Foster et al.   CURRENT BIOLOGY

Culturing captures members of the soil rare biosphere

(2012) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Risk of Large Oil Spills: A Statistical Analysis in the Aftermath of Deepwater Horizon

(2012) Petrissa Eckle et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Exploring micromycetes biodiversity for screening benzo[a]pyrene degrading potential

(2012) Catherine Rafin et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Unveiling the fungal mycobiota present throughout the cork stopper manufacturing process

(2012) Maria C. Barreto et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Growing Unculturable Bacteria

(2012) E. J. Stewart   JOURNAL OF BACTERIOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Fungal Diversity Is Not Determined by Mineral and Chemical Differences in Serpentine Substrates

(2012) Stefania Daghino et al.   PLoS One

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample

(2011) Ivone Vaz-Moreira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Systematic Search for Cultivatable Fungi That Best Deconstruct Cell Walls of Miscanthus and Sugarcane in the Field

(2011) Prachand Shrestha et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

Interactive metagenomic visualization in a Web browser

(2011) Brian D Ondov et al.   BMC BIOINFORMATICS

Establishment techniques to using willow for phytoremediation on a former oil refinery in southern Quebec: achievements and constraints

(2011) Werther Guidi et al.   CHEMISTRY AND ECOLOGY

Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene

(2011) Florence Martin et al.   ENVIRONMENTAL POLLUTION

Untapped potential: exploiting fungi in bioremediation of hazardous chemicals

(2011) Hauke Harms et al.   NATURE REVIEWS MICROBIOLOGY

Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution

(2011) Henrique Fragoso dos Santos et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Comparison of culture-dependent and -independent methods for bacterial community monitoring during Montasio cheese manufacturing

(2011) Lisa Carraro et al.   RESEARCH IN MICROBIOLOGY

Recovering Greater Fungal Diversity from Pristine and Diesel Fuel Contaminated Sub-Antarctic Soil Through Cultivation Using Both a High and a Low Nutrient Media Approach

(2011) Belinda C. Ferrari et al.   Frontiers in Microbiology

Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes

(2010) Meenu Tyagi et al.   BIODEGRADATION

Decrease in the abundance and viability of oceanic phytoplankton due to trace levels of complex mixtures of organic pollutants

(2010) Pedro Echeveste et al.   CHEMOSPHERE

Microbial communities involved in anaerobic degradation of alkanes

(2010) Serge Maurice Mbadinga et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Influence of xenobiotic contaminants on landfill soil microbial activity and diversity

(2010) M.I. Pérez-Leblic et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Biotransformation of polychlorinated dibenzo-p-dioxin by Coprinellus species

(2010) Hiroto Suhara et al.   MYCOSCIENCE

The UNITE database for molecular identification of fungi - recent updates and future perspectives

(2010) Kessy Abarenkov et al.   NEW PHYTOLOGIST

Bioremediation of oily sludge-contaminated soil by stimulating indigenous microbes

(2009) Wuxing Liu et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

A renaissance for the pioneering 16S rRNA gene

(2008) Susannah G Tringe et al.   CURRENT OPINION IN MICROBIOLOGY