Microbial Communities and Their Predicted Metabolic Functions in Growth Laminae of a Unique Large Conical Mat from Lake Untersee, East Antarctica

High Prevalence of Gammaproteobacteria in the Sediments of Admiralty Bay and North Bransfield Basin, Northwestern Antarctic Peninsula

(2017) Diego C. Franco et al.   Frontiers in Microbiology

Growth dynamics of a laminated microbial mat in response to variable irradiance in an Antarctic lake

(2016) Ian Hawes et al.   FRESHWATER BIOLOGY

Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon

(2016) Jep Lokesh et al.   Scientific Reports

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community

(2016) Richard Allen White et al.   Frontiers in Microbiology

Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization

(2016) Lucas D. Lopes et al.   Frontiers in Microbiology

Gradual Changes of Gut Microbiota in Weaned Miniature Piglets

(2016) Jun Hu et al.   Frontiers in Microbiology

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity

(2016) Zhilin Yuan et al.   Scientific Reports

Microbial Mat Communities along an Oxygen Gradient in a Perennially Ice-Covered Antarctic Lake

(2015) Anne D. Jungblut et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic analysis provides insights into functional capacity in a hyperarid desert soil niche community

(2015) Surendra Vikram et al.   ENVIRONMENTAL MICROBIOLOGY

Growth of modern branched columnar stromatolites in Lake Joyce, Antarctica

(2015) T. J. Mackey et al.   Geobiology

Climate Conditions at Perennially Ice-Covered Lake Untersee, East Antarctica

(2015) Dale T. Andersen et al.   Journal of Applied Meteorology and Climatology

Prokaryotic Community in Lacustrine Sediments of Byers Peninsula (Livingston Island, Maritime Antarctica)

(2015) Concetta Gugliandolo et al.   MICROBIAL ECOLOGY

Microbial ecology of Antarctic aquatic systems

(2015) Ricardo Cavicchioli   NATURE REVIEWS MICROBIOLOGY

Cyanobacterial diversity in benthic mats of the McMurdo Dry Valley lakes, Antarctica

(2015) L. Zhang et al.   POLAR BIOLOGY

A pyrosequencing-based analysis of microbial diversity governed by ecological conditions in the Winogradsky column

(2015) Firouz Abbasian et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

The bacterial communities associated with fecal types and body weight of rex rabbits

(2015) Bo Zeng et al.   Scientific Reports

Legacies of recent environmental change in the benthic communities of Lake Joyce, a perennially ice-covered Antarctic lake

(2015) I. HAWES et al.   Geobiology

Comparative analysis of bacterial community-metagenomics in coastal Gulf of Mexico sediment microcosms following exposure to Macondo oil (MC252)

(2014) Hyunmin Koo et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Potentially novel copper resistance genes in copper-enriched activated sludge revealed by metagenomic analysis

(2014) Li-Guan Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

STAMP: statistical analysis of taxonomic and functional profiles

(2014) Donovan H. Parks et al.   BIOINFORMATICS

Evidence for arsenic metabolism and cycling by microorganisms 2.7 billion years ago

(2014) Marie Catherine Sforna et al.   Nature Geoscience

PNAS Plus: From the Cover: Oligotyping analysis of the human oral microbiome

(2014) A. M. Eren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Oligotyping reveals community level habitat selection within the genus Vibrio

(2014) Victor T. Schmidt et al.   Frontiers in Microbiology

Core functional traits of bacterial communities in the Upper Mississippi River show limited variation in response to land cover

(2014) Christopher Staley et al.   Frontiers in Microbiology

Oligotyping reveals differences between gut microbiomes of free-ranging sympatric Namibian carnivores (Acinonyx jubatus, Canis mesomelas) on a bacterial species-like level

(2014) Sebastian Menke et al.   Frontiers in Microbiology

Bacterial community shift in the coastal Gulf of Mexico salt-marsh sediment microcosm in vitro following exposure to the Mississippi Canyon Block 252 oil (MC252)

(2014) Hyunmin Koo et al.   3 Biotech

Modular community structure suggests metabolic plasticity during the transition to polar night in ice-covered Antarctic lakes

(2013) Trista J Vick-Majors et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Metabolic potential of lithifying cyanobacteria-dominated thrombolitic mats

(2013) Jennifer M. Mobberley et al.   PHOTOSYNTHESIS RESEARCH

Interactions between Snow Chemistry, Mercury Inputs and Microbial Population Dynamics in an Arctic Snowpack

(2013) Catherine Larose et al.   PLoS One

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Microbial dynamics and flagellate grazing during transition to winter in Lakes Hoare and Bonney, Antarctica

(2012) Jill Thurman et al.   FEMS MICROBIOLOGY ECOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An Early-Branching Microbialite Cyanobacterium Forms Intracellular Carbonates

(2012) E. Couradeau et al.   SCIENCE

Metagenomic Analysis of Stress Genes in Microbial Mat Communities from Antarctica and the High Arctic

(2011) Thibault Varin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Assessment of bacterial diversity in the cattle tick Rhipicephalus (Boophilus) microplus through tag-encoded pyrosequencing

(2011) Renato Andreotti et al.   BMC MICROBIOLOGY

Microbial diversity of active layer and permafrost in an acidic wetland from the Canadian High Arctic

(2011) Roland C. Wilhelm et al.   CANADIAN JOURNAL OF MICROBIOLOGY

Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing

(2011) Jennifer M. Mobberley et al.   ENVIRONMENTAL MICROBIOLOGY

Modern carbonate microbialites from an asbestos open pit pond, Yukon, Canada

(2011) I. M. POWER et al.   Geobiology

Discovery of large conical stromatolites in Lake Untersee, Antarctica

(2011) D. T. ANDERSEN et al.   Geobiology

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Pyrosequencing study of fecal microflora of autistic and control children

(2010) Sydney M. Finegold et al.   ANAEROBE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Evaluation of the bacterial diversity of Pressure ulcers using bTEFAP pyrosequencing

(2010) Drake M Smith et al.   BMC Medical Genomics

Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas

(2010) K. L. MYSHRALL et al.   Geobiology

An integrative study of a meromictic lake ecosystem in Antarctica

(2010) Federico M Lauro et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing

(2009) Jan S Suchodolski et al.   BMC MICROBIOLOGY

Comparative analyses of actinobacterial genomic fragments from Lake Kinneret

(2009) Alon Philosof et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay

(2009) M. A. ALLEN et al.   Geobiology

Global distribution of cyanobacterial ecotypes in the cold biosphere

(2009) Anne D Jungblut et al.   ISME Journal

Survey of bacterial diversity in chronic wounds using Pyrosequencing, DGGE, and full ribosome shotgun sequencing

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

Flat laminated microbial mat communities

(2008) Jonathan Franks et al.   EARTH-SCIENCE REVIEWS

Annual growth layers as proxies of past growth conditions for benthic microbial mats in a perennially ice-covered Antarctic lake

(2008) Donna L. Sutherland et al.   FEMS MICROBIOLOGY ECOLOGY

Bacterial Tag–Encoded FLX Amplicon Pyrosequencing (bTEFAP) for Microbiome Studies: Bacterial Diversity in the Ileum of Newly Weaned Salmonella-Infected Pigs

(2008) Scot E. Dowd et al.   Foodborne Pathogens and Disease

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

(2008) Falicia Goh et al.   ISME Journal