Comparative microbial diversity analyses of modern marine thrombolitic mats by barcoded pyrosequencing

Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing

(2010) J. K. Harris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas

(2010) K. L. MYSHRALL et al.   Geobiology

Experimental factors affecting PCR-based estimates of microbial species richness and evenness

(2010) Anna Engelbrektson et al.   ISME Journal

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Dormancy contributes to the maintenance of microbial diversity

(2010) S. E. Jones et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

(2010) C. B. Walker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

(2010) Fernando Santos et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The Effects of Alignment Quality, Distance Calculation Method, Sequence Filtering, and Region on the Analysis of 16S rRNA Gene-Based Studies

(2010) Patrick D. Schloss   PLoS Computational Biology

Bar-Coded Pyrosequencing Reveals Shared Bacterial Community Properties along the Temperature Gradients of Two Alkaline Hot Springs in Yellowstone National Park

(2009) S. R. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Linking Microbial Community Function to Phylogeny of Sulfate-Reducing Deltaproteobacteria in Marine Sediments by Combining Stable Isotope Probing with Magnetic-Bead Capture Hybridization of 16S rRNA

(2009) T. Miyatake et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial diversity in modern marine stromatolites, Highborne Cay, Bahamas

(2009) Laura K. Baumgartner et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Formation and diagenesis of modern marine calcified cyanobacteria

(2009) N. PLANAVSKY et al.   Geobiology

Bacterial, archaeal and eukaryotic diversity of smooth and pustular microbial mat communities in the hypersaline lagoon of Shark Bay

(2009) M. A. ALLEN et al.   Geobiology

Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida

(2009) Yui Sato et al.   ISME Journal

Molecular and morphological characterization of cyanobacterial diversity in the stromatolites of Highborne Cay, Bahamas

(2009) Jamie S Foster et al.   ISME Journal

Culture-independent identification of gut bacteria correlated with the onset of diabetes in a rat model

(2009) Luiz FW Roesch et al.   ISME Journal

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Identification and Ecophysiological Characterization of Epiphytic Protein-Hydrolyzing Saprospiraceae ("Candidatus Epiflobacter" spp.) in Activated Sludge

(2008) Y. Xia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparative Characterization of the Microbial Diversities of an Artificial Microbialite Model and a Natural Stromatolite

(2008) S. A. Havemann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity and Stratification of Archaea in a Hypersaline Microbial Mat

(2008) C. E. Robertson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Processes of carbonate precipitation in modern microbial mats

(2008) Christophe Dupraz et al.   EARTH-SCIENCE REVIEWS

Shifts in methanogen community structure and function associated with long-term manipulation of sulfate and salinity in a hypersaline microbial mat

(2008) Jason M. Smith et al.   ENVIRONMENTAL MICROBIOLOGY

Lipid biomarker and phylogenetic analyses to reveal archaeal biodiversity and distribution in hypersaline microbial mat and underlying sediment

(2008) L. L. JAHNKE et al.   Geobiology

Genetic and morphological characterization of Rivularia and Calothrix (Nostocales, Cyanobacteria) from running water

(2008) E. Berrendero et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Determining the specific microbial populations and their spatial distribution within the stromatolite ecosystem of Shark Bay

(2008) Falicia Goh et al.   ISME Journal

A salinity and sulfate manipulation of hypersaline microbial mats reveals stasis in the cyanobacterial community structure

(2008) Stefan J Green et al.   ISME Journal

Osmoprotectants enhance methane production from the anaerobic digestion of food wastes containing a high content of salt

(2008) Giyang Oh et al.   JOURNAL OF CHEMICAL TECHNOLOGY AND BIOTECHNOLOGY

Biodiversity and biogeography of phages in modern stromatolites and thrombolites

(2008) Christelle Desnues et al.   NATURE

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex

(2008) Micah Hamady et al.   NATURE METHODS

Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

(2008) Céline Brochier-Armanet et al.   NATURE REVIEWS MICROBIOLOGY