Unraveling Core Functional Microbiota in Traditional Solid-State Fermentation by High-Throughput Amplicons and Metatranscriptomics Sequencing
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Unraveling Core Functional Microbiota in Traditional Solid-State Fermentation by High-Throughput Amplicons and Metatranscriptomics Sequencing
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-07-14
DOI
10.3389/fmicb.2017.01294
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Evaluating the core microbiota in complex communities: A systematic investigation
- (2017) Carmen Astudillo-García et al. ENVIRONMENTAL MICROBIOLOGY
- Production of Potent Antimicrobial Compounds from Streptomyces cyaneofuscatus Associated with Fresh Water Sediment
- (2017) Zothanpuia et al. Frontiers in Microbiology
- Elucidating and Regulating the Acetoin Production Role of Microbial Functional Groups in Multispecies Acetic Acid Fermentation
- (2016) Zhen-Ming Lu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Modeling central metabolism and energy biosynthesis across microbial life
- (2016) Janaka N. Edirisinghe et al. BMC GENOMICS
- Substrate influences on archaeal and bacterial assemblages in constructed wetland microcosms
- (2016) Yan Long et al. ECOLOGICAL ENGINEERING
- Influences of plant type on bacterial and archaeal communities in constructed wetland treating polluted river water
- (2016) Yan Long et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Composition and function of sourdough microbiota: From ecological theory to bread quality
- (2016) Michael Gänzle et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- The Core and Seasonal Microbiota of Raw Bovine Milk in Tanker Trucks and the Impact of Transfer to a Milk Processing Facility
- (2016) Mary E. Kable et al. mBio
- Aligning the Measurement of Microbial Diversity with Macroecological Theory
- (2016) James C. Stegen et al. Frontiers in Microbiology
- Functional Properties of Microorganisms in Fermented Foods
- (2016) Jyoti P. Tamang et al. Frontiers in Microbiology
- Marine microbial communities of the Great Barrier Reef lagoon are influenced by riverine floodwaters and seasonal weather events
- (2016) Florent E. Angly et al. PeerJ
- Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate
- (2016) Francesca De Filippis et al. Scientific Reports
- Exploring flavour-producing core microbiota in multispecies solid-state fermentation of traditional Chinese vinegar
- (2016) Zong-Min Wang et al. Scientific Reports
- Alamethicin Suppresses Methanogenesis and Promotes Acetogenesis in Bioelectrochemical Systems
- (2015) Xiuping Zhu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Mechanisms of acid tolerance in bacteria and prospects in biotechnology and bioremediation
- (2015) Yuping Liu et al. BIOTECHNOLOGY ADVANCES
- Sphingolipids contribute to acetic acid resistance in Zygosaccharomyces bailii
- (2015) Lina Lindahl et al. BIOTECHNOLOGY AND BIOENGINEERING
- Influence of low pH on the metabolic activity of Lactobacillus buchneri and Lactobacillus parabuchneri strains in Tilsit-type model cheese
- (2015) Marie-Therese Fröhlich-Wyder et al. Dairy Science & Technology
- Effects of plant biomass on bacterial community structure in constructed wetlands used for tertiary wastewater treatment
- (2015) Yi Chen et al. ECOLOGICAL ENGINEERING
- Effects of a novel encapsulating technique on the temperature tolerance and anti-colitis activity of the probiotic bacterium Lactobacillus kefiranofaciens M1
- (2015) Sheng-Yao Wang et al. FOOD MICROBIOLOGY
- Functionally Structured Genomes in Lactobacillus kunkeei Colonizing the Honey Crop and Food Products of Honeybees and Stingless Bees
- (2015) Daniel Tamarit et al. Genome Biology and Evolution
- A survey of non-starter lactic acid bacteria in traditional cheeses: Culture dependent identification and survival to simulated gastrointestinal transit
- (2015) Annamaria Ricciardi et al. INTERNATIONAL DAIRY JOURNAL
- Metabolic footprinting of Lactobacillus buchneri strain LA1147 during anaerobic spoilage of fermented cucumbers
- (2015) Suzanne D. Johanningsmeier et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- A phylo-functional core of gut microbiota in healthy young Chinese cohorts across lifestyles, geography and ethnicities
- (2015) Jiachao Zhang et al. ISME Journal
- Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification
- (2015) Kirsten A. Ziesemer et al. Scientific Reports
- Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones
- (2015) Jennifer B. Glass et al. Frontiers in Microbiology
- Is lactate an undervalued functional component of fermented food products?
- (2015) Graciela L. Garrote et al. Frontiers in Microbiology
- Diversity and functions of volatile organic compounds produced by Streptomyces from a disease-suppressive soil
- (2015) Viviane Cordovez et al. Frontiers in Microbiology
- Lactic metabolism revisited: metabolism of lactic acid bacteria in food fermentations and food spoilage
- (2015) Michael G Gänzle Current Opinion in Food Science
- Prokaryotic Communities in Pit Mud from Different-Aged Cellars Used for the Production of Chinese Strong-Flavored Liquor
- (2014) Yong Tao et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversity of the Lactic Acid Bacterium and Yeast Microbiota in the Switch from Firm- to Liquid-Sourdough Fermentation
- (2014) Raffaella Di Cagno et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- In SituAnalysis of Metabolic Characteristics Reveals the Key Yeast in the Spontaneous and Solid-State Fermentation Process of Chinese Light-Style Liquor
- (2014) Yu Kong et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The use of lactic acid-producing, malic acid-producing, or malic acid-degrading yeast strains for acidity adjustment in the wine industry
- (2014) Jing Su et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- High strength vinegar fermentation by Acetobacter pasteurianus via enhancing alcohol respiratory chain
- (2014) Zhengliang Qi et al. BIOTECHNOLOGY AND BIOPROCESS ENGINEERING
- Cheese Rind Communities Provide Tractable Systems for In Situ and In Vitro Studies of Microbial Diversity
- (2014) Benjamin E. Wolfe et al. CELL
- Comparison on aroma compounds in Chinese soy sauce and strong aroma type liquors by gas chromatography–olfactometry, chemical quantitative and odor activity values analysis
- (2014) Xiaoxin Wang et al. EUROPEAN FOOD RESEARCH AND TECHNOLOGY
- High-throughput sequencing of microbial communities in Poro cheese, an artisanal Mexican cheese
- (2014) Alejandro Aldrete-Tapia et al. FOOD MICROBIOLOGY
- Purification and characterization of antifungal compounds from Lactobacillus plantarum HD1 isolated from kimchi
- (2014) Eun Hye Ryu et al. FOOD MICROBIOLOGY
- Filamentous fungal diversity and community structure associated with the solid state fermentation of Chinese Maotai-flavor liquor
- (2014) Bi Chen et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software
- (2014) Mathieu Jacomy et al. PLoS One
- HemI: A Toolkit for Illustrating Heatmaps
- (2014) Wankun Deng et al. PLoS One
- Abundance and Diversity of Bacterial Nitrifiers and Denitrifiers and Their Functional Genes in Tannery Wastewater Treatment Plants Revealed by High-Throughput Sequencing
- (2014) Zhu Wang et al. PLoS One
- Noma Affected Children from Niger Have Distinct Oral Microbial Communities Based on High-Throughput Sequencing of 16S rRNA Gene Fragments
- (2014) Katrine L. Whiteson et al. PLoS Neglected Tropical Diseases
- Microbial succession and the functional potential during the fermentation of Chinese soy sauce brine
- (2014) Joanita Sulaiman et al. Frontiers in Microbiology
- Articles of Significant Interest Selected from This Issue by the Editors
- (2013) APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Current developments in solid-state fermentation
- (2013) Leya Thomas et al. BIOCHEMICAL ENGINEERING JOURNAL
- Evaluation of read count based RNAseq analysis methods
- (2013) Yan Guo et al. BMC GENOMICS
- De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)
- (2013) Touming Liu et al. BMC GENOMICS
- The effect of Acetobacter sp. and a sulfate-reducing bacterial consortium from ethanol fuel environments on fatigue crack propagation in pipeline and storage tank steels
- (2013) J.W. Sowards et al. CORROSION SCIENCE
- Lactobacillus salivarius: Bacteriocin and probiotic activity
- (2013) S. Messaoudi et al. FOOD MICROBIOLOGY
- Hanseniaspora opuntiae, Saccharomyces cerevisiae, Lactobacillus fermentum, and Acetobacter pasteurianus predominate during well-performed Malaysian cocoa bean box fermentations, underlining the importance of these microbial species for a successful cocoa bean fermentation process
- (2013) Zoi Papalexandratou et al. FOOD MICROBIOLOGY
- Culture independent methods to assess the diversity and dynamics of microbiota during food fermentation
- (2013) Luca Cocolin et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Yeast community associated with the solid state fermentation of traditional Chinese Maotai-flavor liquor
- (2013) Qun Wu et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Metatranscriptomic analysis of lactic acid bacterial gene expression during kimchi fermentation
- (2013) Ji Young Jung et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Towards a unified paradigm for sequence-based identification of fungi
- (2013) Urmas Kõljalg et al. MOLECULAR ECOLOGY
- De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
- (2013) Brian J Haas et al. Nature Protocols
- Development of biohydrogen production by photobiological, fermentation and electrochemical processes: A review
- (2013) M.Y. Azwar et al. RENEWABLE & SUSTAINABLE ENERGY REVIEWS
- Reconstructing the Microbial Diversity and Function of Pre-Agricultural Tallgrass Prairie Soils in the United States
- (2013) N. Fierer et al. SCIENCE
- Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes
- (2013) Emily B. Graham et al. SOIL BIOLOGY & BIOCHEMISTRY
- Current perspectives on antifungal lactic acid bacteria as natural bio-preservatives
- (2013) Sarah Crowley et al. TRENDS IN FOOD SCIENCE & TECHNOLOGY
- Next-generation sequencing and its potential impact on food microbial genomics
- (2012) Lisa Solieri et al. ANNALS OF MICROBIOLOGY
- Selection and characterization of a newly isolated thermotolerant Pichia kudriavzevii strain for ethanol production at high temperature from cassava starch hydrolysate
- (2012) Napatchanok Yuangsaard et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Next-generation approaches to the microbial ecology of food fermentations
- (2012) Nicholas A. Bokulich et al. BMB Reports
- A combined intervention using fermented ethanol and supercritical carbon dioxide to control Bacillus cereus and Bacillus subtilis in rice
- (2012) S.A. Kim et al. FOOD CONTROL
- Effect of ethanol and low pH on citrulline and ornithine excretion and arc gene expression by strains of Lactobacillus brevis and Pediococcus pentosaceus
- (2012) Isabel Araque et al. FOOD MICROBIOLOGY
- Microbial ecology of sorghum sourdoughs: Effect of substrate supply and phenolic compounds on composition of fermentation microbiota
- (2012) Bonno Sekwati-Monang et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Diversity of yeast species during fermentative process contributing to Chinese Maotai-flavour liquor making
- (2012) Q. Wu et al. LETTERS IN APPLIED MICROBIOLOGY
- Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
- (2012) C. L. Schoch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Enhancement of Ethanol–Acetic Acid Esterification Under Room Temperature and Non-catalytic Condition via Pulsed Electric Field Application
- (2011) Zhi-Rong Lin et al. Food and Bioprocess Technology
- Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges
- (2011) Susanne Schmitt et al. ISME Journal
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started