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Isothermal Amplification and Lateral-Flow Assay for Detecting Crown-Gall-Causing Agrobacterium spp.

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Endophytic Actinobacteria Associated with Dracaena cochinchinensis Lour.: Isolation, Diversity, and Their Cytotoxic Activities

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Vibrio crassostreae, a benign oyster colonizer turned into a pathogen after plasmid acquisition

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A Leaf-Inhabiting Endophytic Bacterium, Rhodococcus sp. KB6, Enhances Sweet Potato Resistance to Black Rot Disease Caused by Ceratocystis fimbriata

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Mining the genome of Rhodococcus fascians , a plant growth-promoting bacterium gone astray

(2016) Isolde M. Francis et al.   New Biotechnology

Beneficial Microbes Affect Endogenous Mechanisms Controlling Root Development

(2016) Eline H. Verbon et al.   TRENDS IN PLANT SCIENCE

A Functional Bacterium-to-Plant DNA Transfer Machinery of Rhizobium etli

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Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria

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(2015) Stefanie P Glaeser et al.   ISME Journal

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(2015) Yang Bai et al.   NATURE

Horizontal gene transfer: building the web of life

(2015) Shannon M. Soucy et al.   NATURE REVIEWS GENETICS

Isolation of novel leaf-inhabiting endophytic bacteria in Arabidopsis thaliana and their antagonistic effects on phytophathogens

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First Report of Phytopathogenic Rhodococcus Isolates on Pistachio Bushy Top Syndrome ‘UCB-1’ Rootstock in New Mexico

(2015) R. A. Stamler et al.   PLANT DISEASE

First Report of Rhodococcus Isolates Causing Pistachio Bushy Top Syndrome on ‘UCB-1’ Rootstock in California and Arizona

(2015) Rio A. Stamler et al.   PLANT DISEASE

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(2015) S. L. Lebeis et al.   SCIENCE

Induced Systemic Resistance by Beneficial Microbes

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Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Friend and foe: factors influencing the movement of the bacteriumHelicobacter pylorialong the parasitism-mutualism continuum

(2014) Derek Lin et al.   Evolutionary Applications

Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci

(2014) Allison L. Creason et al.   PLoS One

Analysis of genes contributing to plant-beneficial functions in plant growth-promoting rhizobacteria and related Proteobacteria

(2014) Maxime Bruto et al.   Scientific Reports

Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus

(2014) Allison L. Creason et al.   Frontiers in Plant Science

Membrane transport systems and the biodegradation potential and pathogenicity of genus Rhodococcus

(2014) Carla C. C. R. de Carvalho et al.   Frontiers in Physiology

Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction

(2014) Zhian N. Kamvar et al.   PeerJ

Cell and Developmental Biology of Arbuscular Mycorrhiza Symbiosis

(2013) Caroline Gutjahr et al.   Annual Review of Cell and Developmental Biology

GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis

(2013) Bruno Contreras-Moreira et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

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(2013) Courtney Sparacino-Watkins et al.   CHEMICAL SOCIETY REVIEWS

Bacteria with ACC deaminase can promote plant growth and help to feed the world

(2013) Bernard R. Glick   MICROBIOLOGICAL RESEARCH

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

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(2013) Iñaki Comas et al.   NATURE GENETICS

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

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(2013) Natacha Bodenhausen et al.   PLoS One

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(2013) Jordan Vacheron et al.   Frontiers in Plant Science

Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots

(2013) Sujai Kumar et al.   Frontiers in Genetics

Genome Sequence and Mutational Analysis of Plant-Growth-Promoting Bacterium Agrobacterium tumefaciens CCNWGS0286 Isolated from a Zinc-Lead Mine Tailing

(2012) Xiuli Hao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study

(2012) Timothy M Walker et al.   LANCET INFECTIOUS DISEASES

Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study

(2012) Simon R Harris et al.   LANCET INFECTIOUS DISEASES

pFiD188, the Linear Virulence Plasmid ofRhodococcus fasciansD188

(2012) Isolde Francis et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

(2012) Yanbin Yin et al.   NUCLEIC ACIDS RESEARCH

Loop-Mediated Isothermal Amplification and Polymerase Chain Reaction Methods for Specific and Rapid Detection ofRhodococcus fascians

(2012) M. Serdani et al.   PLANT DISEASE

Which specificity in cooperation between phytostimulating rhizobacteria and plants?

(2012) Benoît Drogue et al.   RESEARCH IN MICROBIOLOGY

Molecular mechanisms controlling legume autoregulation of nodulation

(2011) Dugald E. Reid et al.   ANNALS OF BOTANY

A Successful Bacterial Coup d'État: HowRhodococcus fasciansRedirects Plant Development

(2011) Elisabeth Stes et al.   Annual Review of Phytopathology

Commensal Bacteroides Species Induce Colitis in Host-Genotype-Specific Fashion in a Mouse Model of Inflammatory Bowel Disease

(2011) Seth M. Bloom et al.   Cell Host & Microbe

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Core Gene Set As the Basis of Multilocus Sequence Analysis of the Subclass Actinobacteridae

(2011) Toïdi Adékambi et al.   PLoS One

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(2011) J. L. Sachs et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Bacterial epidemiology and biology - lessons from genome sequencing

(2011) Julian Parkhill et al.   GENOME BIOLOGY

Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria

(2010) Sheng Qin et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Rhodococcus fasciansImpacts Plant Development Through the Dynamic Fas-Mediated Production of a Cytokinin Mix

(2010) Ine Pertry et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions

(2010) Michal Letek et al.   PLoS Genetics

Isolation, Diversity, and Antimicrobial Activity of Rare Actinobacteria from Medicinal Plants of Tropical Rain Forests in Xishuangbanna, China

(2009) S. Qin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

TOO MUCH LOVE, a Root Regulator Associated with the Long-Distance Control of Nodulation inLotus japonicus

(2009) Shimpei Magori et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Ratios of Cells With and Without Virulence Genes inRhodococcus fasciansPopulations Correlate with Degrees of Symptom Development

(2009) Ekaterina V. Nikolaeva et al.   PLANT DISEASE

Identification of Rhodococcus fascians cytokinins and their modus operandi to reshape the plant

(2009) Ine Pertry et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The att locus of Rhodococcus fascians strain D188 is essential for full virulence on tobacco through the production of an autoregulatory compound

(2003) Tania Maes et al.   MOLECULAR MICROBIOLOGY