Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes

High-Throughput Genomic Data in Systematics and Phylogenetics

(2013) Emily Moriarty Lemmon et al.   Annual Review of Ecology Evolution and Systematics

A Remarkable Species Flock ofCyprinodonPupfishes Endemic to San Salvador Island, Bahamas

(2013) Christopher H. Martin et al.   Bulletin of the Peabody Museum of Natural History

STRONG ASSORTATIVE MATING BY DIET, COLOR, SIZE, AND MORPHOLOGY BUT LIMITED PROGRESS TOWARD SYMPATRIC SPECIATION IN A CLASSIC EXAMPLE: CAMEROON CRATER LAKE CICHLIDS

(2013) Christopher H. Martin   EVOLUTION

The evolutionary history ofXiphophorusfish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing

(2013) Julia C. Jones et al.   MOLECULAR ECOLOGY

Stacks: an analysis tool set for population genomics

(2013) Julian Catchen et al.   MOLECULAR ECOLOGY

On the Measurement of Ecological Novelty: Scale-Eating Pupfish Are Separated by 168 my from Other Scale-Eating Fishes

(2013) Christopher H. Martin et al.   PLoS One

Macroevolutionary speciation rates are decoupled from the evolution of intrinsic reproductive isolation in Drosophila and birds

(2013) D. L. Rabosky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Fitness Peaks on the Adaptive Landscape Drive Adaptive Radiation in the Wild

(2013) C. H. Martin et al.   SCIENCE

Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)

(2013) Deren A. R. Eaton et al.   SYSTEMATIC BIOLOGY

Weak Disruptive Selection and Incomplete Phenotypic Divergence in Two Classic Examples of Sympatric Speciation: Cameroon Crater Lake Cichlids

(2012) Christopher H. Martin   AMERICAN NATURALIST

Goldilocks Meets Santa Rosalia: An Ephemeral Speciation Model Explains Patterns of Diversification Across Time Scales

(2012) Erica Bree Rosenblum et al.   Evolutionary Biology

Recent nonhybrid origin of sunflower ecotypes in a novel habitat

(2012) Rose L. Andrew et al.   MOLECULAR ECOLOGY

Genome-wide RAD sequence data provide unprecedented resolution of species boundaries and relationships in the Lake Victoria cichlid adaptive radiation

(2012) Catherine E. Wagner et al.   MOLECULAR ECOLOGY

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

(2012) Eva-Maria Willing et al.   PLoS One

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

TROPHIC NOVELTY IS LINKED TO EXCEPTIONAL RATES OF MORPHOLOGICAL DIVERSIFICATION IN TWO ADAPTIVE RADIATIONS OF CYPRINODON PUPFISH

(2011) Christopher H. Martin et al.   EVOLUTION

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

The million-year wait for macroevolutionary bursts

(2011) J. C. Uyeda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Biomechanical trade-offs bias rates of evolution in the feeding apparatus of fishes

(2011) R. Holzman et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Magic traits in speciation: ‘magic’ but not rare?

(2011) Maria R. Servedio et al.   TRENDS IN ECOLOGY & EVOLUTION

Stacks : Building and Genotyping Loci De Novo From Short-Read Sequences

(2011) Julian M. Catchen et al.   G3-Genes Genomes Genetics

Speciation Has a Spatial Scale That Depends on Levels of Gene Flow

(2010) Yael Kisel et al.   AMERICAN NATURALIST

Sexual Signal Evolution Outpaces Ecological Divergence during Electric Fish Species Radiation

(2010) Matthew E. Arnegard et al.   AMERICAN NATURALIST

Reproductive isolation among endemic pupfishes (Cyprinodon) on San Salvador Island, Bahamas: microsatellite evidence

(2010) BRUCE J. TURNER et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Rapid sympatric ecological differentiation of crater lake cichlid fishes within historic times

(2010) Kathryn R Elmer et al.   BMC BIOLOGY

“SAME SAME BUT DIFFERENT”: REPLICATED ECOLOGICAL SPECIATION AT WHITE SANDS

(2010) Erica Bree Rosenblum et al.   EVOLUTION

MATE PREFERENCE ACROSS THE SPECIATION CONTINUUM IN A CLADE OF MIMETIC BUTTERFLIES

(2010) Richard M. Merrill et al.   EVOLUTION

Constraints on speciation suggested by comparing lake-stream stickleback divergence across two continents

(2010) DANIEL BERNER et al.   MOLECULAR ECOLOGY

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds

(2010) Mathieu Gautier et al.   PLoS One

A Draft Sequence of the Neandertal Genome

(2010) R. E. Green et al.   SCIENCE

High niche overlap between two successfully coexisting pairs of Lake Malawi cichlid fishes

(2009) Christopher H. Martin et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

CONTRASTING PATTERNS OF SPATIAL GENETIC STRUCTURE IN SYMPATRIC ROCK-DWELLING CICHLID FISHES

(2009) Catherine E. Wagner et al.   EVOLUTION

VARIABLE PROGRESS TOWARD ECOLOGICAL SPECIATION IN PARAPATRY: STICKLEBACK ACROSS EIGHT LAKE-STREAM TRANSITIONS

(2009) Daniel Berner et al.   EVOLUTION

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Along the speciation continuum in sticklebacks

(2009) A. P. Hendry et al.   JOURNAL OF FISH BIOLOGY

Reconstructing Indian population history

(2009) David Reich et al.   NATURE

Conservatism and diversification of plant functional traits: Evolutionary rates versus phylogenetic signal

(2009) D. Ackerly   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetics and ecological speciation

(2009) D. Schluter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ecological explanations for (incomplete) speciation

(2009) Patrik Nosil et al.   TRENDS IN ECOLOGY & EVOLUTION

Adaptive radiation, nonadaptive radiation, ecological speciation and nonecological speciation

(2009) Rebecca J. Rundell et al.   TRENDS IN ECOLOGY & EVOLUTION

Predictable Patterns of Disruptive Selection in Stickleback in Postglacial Lakes

(2008) Daniel I. Bolnick et al.   AMERICAN NATURALIST

Fast NJ-like algorithms to deal with incomplete distance matrices

(2008) Alexis Criscuolo et al.   BMC BIOINFORMATICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

Speciation through sensory drive in cichlid fish

(2008) Ole Seehausen et al.   NATURE

Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation

(2008) J. Mallet   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES