Multi-scale approaches for high-speed imaging and analysis of large neural populations

Volumetric two-photon imaging of neurons using stereoscopy (vTwINS)

(2017) Alexander Song et al.   NATURE METHODS

Video-rate volumetric functional imaging of the brain at synaptic resolution

(2017) Rongwen Lu et al.   NATURE NEUROSCIENCE

Fast online deconvolution of calcium imaging data

(2017) Johannes Friedrich et al.   PLoS Computational Biology

Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo

(2016) Helen H. Yang et al.   CELL

Compressed Nonnegative Matrix Factorization Is Fast and Accurate

(2016) Mariano Tepper et al.   IEEE TRANSACTIONS ON SIGNAL PROCESSING

Voltage imaging to understand connections and functions of neuronal circuits

(2016) Srdjan D. Antic et al.   JOURNAL OF NEUROPHYSIOLOGY

Fast volumetric calcium imaging across multiple cortical layers using sculpted light

(2016) Robert Prevedel et al.   NATURE METHODS

Simultaneous Multi-plane Imaging of Neural Circuits

(2016) Weijian Yang et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Wireless Recording in the Peripheral Nervous System with Ultrasonic Neural Dust

(2016) Dongjin Seo et al.   NEURON

Calcium imaging of neural circuits with extended depth-of-field light-sheet microscopy

(2016) Sean Quirin et al.   OPTICS LETTERS

Compressive light-field microscopy for 3D neural activity recording

(2016) Nicolas C. Pégard et al.   Optica

SPED Light Sheet Microscopy: Fast Mapping of Biological System Structure and Function

(2015) Raju Tomer et al.   CELL

Designs and sensing mechanisms of genetically encoded fluorescent voltage indicators

(2015) François St-Pierre et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

The evolving capabilities of rhodopsin-based genetically encoded voltage indicators

(2015) Yiyang Gong   CURRENT OPINION IN CHEMICAL BIOLOGY

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

(2015) Matthew B. Bouchard et al.   Nature Photonics

Efficient processing and analysis of large-scale light-sheet microscopy data

(2015) Fernando Amat et al.   Nature Protocols

Cellular Level Brain Imaging in Behaving Mammals: An Engineering Approach

(2015) Elizabeth J.O. Hamel et al.   NEURON

Closed-Loop and Activity-Guided Optogenetic Control

(2015) Logan Grosenick et al.   NEURON

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor

(2015) Y. Gong et al.   SCIENCE

Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data

(2015) Daniel Soudry et al.   PLoS Computational Biology

Decoupled illumination detection in light sheet microscopy for fast volumetric imaging

(2015) Omar E. Olarte et al.   Optica

Light-sheet functional imaging in fictively behaving zebrafish

(2014) Nikita Vladimirov et al.   NATURE METHODS

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

(2014) Adam M Packer et al.   NATURE METHODS

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Volitional modulation of optically recorded calcium signals during neuroprosthetic learning

(2014) Kelly B Clancy et al.   NATURE NEUROSCIENCE

Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior

(2014) Ruben Portugues et al.   NEURON

Algorithms for nonnegative matrix and tensor factorizations: a unified view based on block coordinate descent framework

(2013) Jingu Kim et al.   JOURNAL OF GLOBAL OPTIMIZATION

Parallel matrix factorization for recommender systems

(2013) Hsiang-Fu Yu et al.   KNOWLEDGE AND INFORMATION SYSTEMS

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Rapid 3D light-sheet microscopy with a tunable lens

(2013) Florian O. Fahrbach et al.   OPTICS EXPRESS

Physical principles for scalable neural recording

(2013) Adam H. Marblestone et al.   Frontiers in Computational Neuroscience

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

A multilevel approach for nonnegative matrix factorization

(2011) Nicolas Gillis et al.   JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS

Miniaturized integration of a fluorescence microscope

(2011) Kunal K Ghosh et al.   NATURE METHODS

Finding Structure with Randomness: Probabilistic Algorithms for Constructing Approximate Matrix Decompositions

(2011) N. Halko et al.   SIAM REVIEW

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Two-photon microscopy with diffractive optical elements and spatial light modulators

(2010) Brendon O. Watson   Frontiers in Neuroscience

Fast Local Algorithms for Large Scale Nonnegative Matrix and Tensor Factorizations

(2009) Andrzej CICHOCKI et al.   IEICE TRANSACTIONS ON FUNDAMENTALS OF ELECTRONICS COMMUNICATIONS AND COMPUT

SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators

(2008) Volodymyr Nikolenko   Frontiers in Neural Circuits