Efficient "Shotgun" Inference of Neural Connectivity from Highly Sub-sampled Activity Data

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

(2015) Matthew B. Bouchard et al.   Nature Photonics

Identifying and Tracking Simulated Synaptic Inputs from Neuronal Firing: Insights from In Vitro Experiments

(2015) Maxim Volgushev et al.   PLoS Computational Biology

All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins

(2014) Daniel R Hochbaum et al.   NATURE METHODS

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

(2014) Adam M Packer et al.   NATURE METHODS

Visualizing mammalian brain area interactions by dual-axis two-photon calcium imaging

(2014) Jérôme Lecoq et al.   NATURE NEUROSCIENCE

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields

(2014) John Peter Rickgauer et al.   NATURE NEUROSCIENCE

Learning Precisely Timed Spikes

(2014) Raoul-Martin Memmesheimer et al.   NEURON

NeuroElectro: a window to the world's neuron electrophysiology data

(2014) Shreejoy J. Tripathy et al.   Frontiers in Neuroinformatics

Fast state-space methods for inferring dendritic synaptic connectivity

(2013) Ari Pakman et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Fast inference in generalized linear models via expected log-likelihoods

(2013) Alexandro D. Ramirez et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

(2013) Moritz Helmstaedter   NATURE METHODS

Three-dimensional mapping of microcircuit correlation structure

(2013) R. James Cotton et al.   Frontiers in Neural Circuits

Successful Reconstruction of a Physiological Circuit with Known Connectivity from Spiking Activity Alone

(2013) Felipe Gerhard et al.   PLoS Computational Biology

Chronic calcium imaging in neuronal development and disease

(2012) Gayane Aramuni et al.   EXPERIMENTAL NEUROLOGY

Fast two-photon in vivo imaging with three-dimensional random-access scanning in large tissue volumes

(2012) Gergely Katona et al.   NATURE METHODS

The Brain Activity Map Project and the Challenge of Functional Connectomics

(2012) A. Paul Alivisatos et al.   NEURON

Model-Free Reconstruction of Excitatory Neuronal Connectivity from Calcium Imaging Signals

(2012) Olav Stetter et al.   PLoS Computational Biology

Efficient methods for sampling spike trains in networks of coupled neurons

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

Modeling the impact of common noise inputs on the network activity of retinal ganglion cells

(2011) Michael Vidne et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

How advances in neural recording affect data analysis

(2011) Ian H Stevenson et al.   NATURE NEUROSCIENCE

Expectation Propagation with Factorizing Distributions: A Gaussian Approximation and Performance Results for Simple Models

(2011) Fabiano Ribeiro et al.   NEURAL COMPUTATION

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Bi-stable neural state switches

(2009) André Berndt et al.   NATURE NEUROSCIENCE

Long-Term Relationships between Synaptic Tenacity, Synaptic Remodeling, and Network Activity

(2009) Amir Minerbi et al.   PLOS BIOLOGY

Quantitative determination of the reduction of phototoxicity and photobleaching by controlled light exposure microscopy

(2008) R.A. HOEBE et al.   JOURNAL OF MICROSCOPY

Three-dimensional random access multiphoton microscopy for functional imaging of neuronal activity

(2008) Gaddum Duemani Reddy et al.   NATURE NEUROSCIENCE

A technicolour approach to the connectome

(2008) Jeff W. Lichtman et al.   NATURE REVIEWS NEUROSCIENCE

Pinpointing connectivity despite hidden nodes within stimulus-driven networks

(2008) Duane Q. Nykamp   PHYSICAL REVIEW E

SLM microscopy: scanless two-photon imaging and photostimulation using spatial light modulators

(2008) Volodymyr Nikolenko   Frontiers in Neural Circuits