Fast online deconvolution of calcium imaging data

Population-Level Representation of a Temporal Sequence Underlying Song Production in the Zebra Finch

(2016) Michel A. Picardo et al.   NEURON

Benchmarking Spike Rate Inference in Population Calcium Imaging

(2016) Lucas Theis et al.   NEURON

Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data

(2016) Eftychios A. Pnevmatikakis et al.   NEURON

Accurate spike estimation from noisy calcium signals for ultrafast three-dimensional imaging of large neuronal populations in vivo

(2016) Thomas Deneux et al.   Nature Communications

Reconstruction of burst activity from calcium imaging of neuronal population via Lq minimization and interval screening

(2016) Tingwei Quan et al.   Biomedical Optics Express

Closed-Loop and Activity-Guided Optogenetic Control

(2015) Logan Grosenick et al.   NEURON

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo

(2014) Adam M Packer et al.   NATURE METHODS

Volitional modulation of optically recorded calcium signals during neuroprosthetic learning

(2014) Kelly B Clancy et al.   NATURE NEUROSCIENCE

Simultaneous cellular-resolution optical perturbation and imaging of place cell firing fields

(2014) John Peter Rickgauer et al.   NATURE NEUROSCIENCE

Ultrasensitive fluorescent proteins for imaging neuronal activity

(2013) Tsai-Wen Chen et al.   NATURE

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

(2013) Misha B Ahrens et al.   NATURE METHODS

Fast non-negative temporal deconvolution for laser scanning microscopy

(2012) Kaspar Podgorski et al.   Journal of Biophotonics

Imaging Calcium in Neurons

(2012) Christine Grienberger et al.   NEURON

A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data

(2011) Yuriy Mishchenko et al.   Annals of Applied Statistics

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Spike Inference from Calcium Imaging Using Sequential Monte Carlo Methods

(2009) Joshua T. Vogelstein et al.   BIOPHYSICAL JOURNAL

Fast and Accurate Detection of Action Potentials From Somatic Calcium Fluctuations

(2008) Takuya Sasaki et al.   JOURNAL OF NEUROPHYSIOLOGY

Sequential Optimal Design of Neurophysiology Experiments

(2008) Jeremy Lewi et al.   NEURAL COMPUTATION

Fast Three-Dimensional Fluorescence Imaging of Activity in Neural Populations by Objective-Coupled Planar Illumination Microscopy

(2008) Terrence F. Holekamp et al.   NEURON