Transcriptional response to stress is pre-wired by promoter and enhancer architecture
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Transcriptional response to stress is pre-wired by promoter and enhancer architecture
Authors
Keywords
-
Journal
Nature Communications
Volume 8, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-08-08
DOI
10.1038/s41467-017-00151-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis
- (2016) Jialiang Huang et al. DEVELOPMENTAL CELL
- Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation
- (2016) Fabiana M. Duarte et al. GENES & DEVELOPMENT
- E2F coregulates an essential HSF developmental program that is distinct from the heat-shock response
- (2016) Jian Li et al. GENES & DEVELOPMENT
- Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast
- (2016) Gregory T. Booth et al. GENOME RESEARCH
- Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation
- (2016) Dig B. Mahat et al. MOLECULAR CELL
- Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
- (2016) Dig Bijay Mahat et al. Nature Protocols
- Structures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors
- (2016) Alex M Jaeger et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genomic Organization of Human Transcription Initiation Complexes
- (2016) B. Franklin Pugh et al. PLoS One
- Structures of HSF2 reveal mechanisms for differential regulation of human heat-shock factors
- (2016) Alex M Jaeger et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Characterisation of the global transcriptional response to heat shock and the impact of individual genetic variation
- (2016) Peter Humburg et al. Genome Medicine
- Native Elongating Transcript Sequencing Reveals Human Transcriptional Activity at Nucleotide Resolution
- (2015) Andreas Mayer et al. CELL
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- (2015) Zhonghui Tang et al. CELL
- Human Gene Promoters Are Intrinsically Bidirectional
- (2015) Robin Andersson et al. MOLECULAR CELL
- ChIP-nexus enables improved detection of in vivo transcription factor binding footprints
- (2015) Qiye He et al. NATURE BIOTECHNOLOGY
- Identification of active transcriptional regulatory elements from GRO-seq data
- (2015) Charles G Danko et al. NATURE METHODS
- Histone exchange, chromatin structure and the regulation of transcription
- (2015) Swaminathan Venkatesh et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Getting up to speed with transcription elongation by RNA polymerase II
- (2015) Iris Jonkers et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
- (2015) Erik Arner et al. SCIENCE
- Genetic Tailors: CTCF and Cohesin Shape the Genome During Evolution
- (2015) Matteo Vietri Rudan et al. TRENDS IN GENETICS
- Nucleosome Dancing at the Tempo of Histone Tail Acetylation
- (2015) Angélique Galvani et al. Genes
- A mechanistic link between gene regulation and genome architecture in mammalian development
- (2014) Giancarlo Bonora et al. CURRENT OPINION IN GENETICS & DEVELOPMENT
- Dynamic shifts in occupancy by TAL1 are guided by GATA factors and drive large-scale reprogramming of gene expression during hematopoiesis
- (2014) Weisheng Wu et al. GENOME RESEARCH
- Expression of HSF2 decreases in mitosis to enable stress-inducible transcription and cell survival
- (2014) Alexandra N. Elsing et al. JOURNAL OF CELL BIOLOGY
- HSF1 at a glance
- (2014) A. Vihervaara et al. JOURNAL OF CELL SCIENCE
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- High-resolution digital profiling of the epigenome
- (2014) Gabriel E. Zentner et al. NATURE REVIEWS GENETICS
- Defining NELF-E RNA Binding in HIV-1 and Promoter-Proximal Pause Regions
- (2014) John M. Pagano et al. PLoS Genetics
- Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
- (2014) Iris Jonkers et al. eLife
- Transcription Factor Binding in Human Cells Occurs in Dense Clusters Formed around Cohesin Anchor Sites
- (2013) Jian Yan et al. CELL
- Divergent Transcription: A Driving Force for New Gene Origination?
- (2013) Xuebing Wu et al. CELL
- CTCF and Cohesin: Linking Gene Regulatory Elements with Their Targets
- (2013) Matthias Merkenschlager et al. CELL
- Enhancer transcripts mark active estrogen receptor binding sites
- (2013) N. Hah et al. GENOME RESEARCH
- Transcriptional response to stress in the dynamic chromatin environment of cycling and mitotic cells
- (2013) Anniina Vihervaara et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- Tight Coordination of Protein Translation and HSF1 Activation Supports the Anabolic Malignant State
- (2013) S. Santagata et al. SCIENCE
- Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation
- (2013) William S Kruesi et al. eLife
- HSF1 Drives a Transcriptional Program Distinct from Heat Shock to Support Highly Malignant Human Cancers
- (2012) Marc L. Mendillo et al. CELL
- HSF-1 Regulators DDL-1/2 Link Insulin-like Signaling to Heat-Shock Responses and Modulation of Longevity
- (2012) Wei-Chung Chiang et al. CELL
- Identifying ChIP-seq enrichment using MACS
- (2012) Jianxing Feng et al. Nature Protocols
- Enhancers as information integration hubs in development: lessons from genomics
- (2012) Christa Buecker et al. TRENDS IN GENETICS
- Functional and Mechanistic Diversity of Distal Transcription Enhancers
- (2011) Michael Bulger et al. CELL
- Identification of Heat Shock Factor 1 Molecular and Cellular Targets during Embryonic and Adult Female Meiosis
- (2011) F. Le Masson et al. MOLECULAR AND CELLULAR BIOLOGY
- Mapping and analysis of chromatin state dynamics in nine human cell types
- (2011) Jason Ernst et al. NATURE
- Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
- (2011) Dong Wang et al. NATURE
- Whole-Genome Analysis Reveals That Active Heat Shock Factor Binding Sites Are Mostly Associated with Non-Heat Shock Genes in Drosophila melanogaster
- (2011) Sarah E. Gonsalves et al. PLoS One
- Neuronal circuitry regulates the response of Caenorhabditis elegans to misfolded proteins
- (2011) V. Prahlad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- High levels of nuclear heat-shock factor 1 (HSF1) are associated with poor prognosis in breast cancer
- (2011) S. Santagata et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE)
- (2011) PLOS BIOLOGY
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Heat Shock Transcription Factor 1 Localizes to Sex Chromatin during Meiotic Repression
- (2010) Malin Åkerfelt et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Heat Shock Response: Life on the Verge of Death
- (2010) Klaus Richter et al. MOLECULAR CELL
- Widespread transcription at neuronal activity-regulated enhancers
- (2010) Tae-Kyung Kim et al. NATURE
- Discovery and characterization of chromatin states for systematic annotation of the human genome
- (2010) Jason Ernst et al. NATURE BIOTECHNOLOGY
- Chromatin Landscape Dictates HSF Binding to Target DNA Elements
- (2010) Michael J. Guertin et al. PLoS Genetics
- Heterotrimerization of Heat-Shock Factors 1 and 2 Provides a Transcriptional Switch in Response to Distinct Stimuli
- (2009) Anton Sandqvist et al. MOLECULAR BIOLOGY OF THE CELL
- Discovering Hematopoietic Mechanisms through Genome-wide Analysis of GATA Factor Chromatin Occupancy
- (2009) Tohru Fujiwara et al. MOLECULAR CELL
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Defining mechanisms that regulate RNA polymerase II transcription in vivo
- (2009) Nicholas J. Fuda et al. NATURE
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Regulation of the Cellular Heat Shock Response in Caenorhabditis elegans by Thermosensory Neurons
- (2008) V. Prahlad et al. SCIENCE
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started