Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Published 2014 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
Authors
Keywords
-
Journal
eLife
Volume 3, Issue -, Pages -
Publisher
eLife Sciences Publications, Ltd
Online
2014-04-29
DOI
10.7554/elife.02407
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation
- (2014) M. S. Buckley et al. GENES & DEVELOPMENT
- Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition
- (2013) Alika K Maunakea et al. CELL RESEARCH
- Intragenic epigenetic changes modulate NCAM alternative splicing in neuronal differentiation
- (2013) Ignacio E Schor et al. EMBO JOURNAL
- Distinct mechanisms of transcriptional pausing orchestrated by GAGA factor and M1BP, a novel transcription factor
- (2013) Jian Li et al. EMBO JOURNAL
- Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells
- (2013) Charles G. Danko et al. MOLECULAR CELL
- Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals
- (2013) Telmo Henriques et al. MOLECULAR CELL
- Genomic organization of human transcription initiation complexes
- (2013) Bryan J. Venters et al. NATURE
- Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells
- (2013) A. A. Sigova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- Co-transcriptional regulation of alternative pre-mRNA splicing
- (2012) Sanjeev Shukla et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Nucleosomal Elements that Control the Topography of the Barrier to Transcription
- (2012) Lacramioara Bintu et al. CELL
- Co-transcriptional degradation of aberrant pre-mRNA by Xrn2
- (2012) Lee Davidson et al. EMBO JOURNAL
- Deep sequencing of subcellular RNA fractions shows splicing to be predominantly co-transcriptional in the human genome but inefficient for lncRNAs
- (2012) H. Tilgner et al. GENOME RESEARCH
- CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters
- (2012) R. Fenouil et al. GENOME RESEARCH
- mRNA Decapping Factors and the Exonuclease Xrn2 Function in Widespread Premature Termination of RNA Polymerase II Transcription
- (2012) Kris Brannan et al. MOLECULAR CELL
- Kinetic Competition between RNA Polymerase II and Sen1-Dependent Transcription Termination
- (2012) Dane Z. Hazelbaker et al. MOLECULAR CELL
- Chromatin-modifying enzymes as modulators of reprogramming
- (2012) Tamer T. Onder et al. NATURE
- Landscape of transcription in human cells
- (2012) Sarah Djebali et al. NATURE
- Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans
- (2012) Karen Adelman et al. NATURE REVIEWS GENETICS
- BRD4 is an atypical kinase that phosphorylates Serine2 of the RNA Polymerase II carboxy-terminal domain
- (2012) B. N. Devaiah et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Differential GC Content between Exons and Introns Establishes Distinct Strategies of Splice-Site Recognition
- (2012) Maayan Amit et al. Cell Reports
- Divergent transcription: A new feature of active promoters
- (2011) Amy C. Seila et al. CELL CYCLE
- Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
- (2011) I. M. Min et al. GENES & DEVELOPMENT
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing
- (2011) Sanjeev Shukla et al. NATURE
- DNA-binding factors shape the mouse methylome at distal regulatory regions
- (2011) Michael B. Stadler et al. NATURE
- XPB, a subunit of TFIIH, is a target of the natural product triptolide
- (2011) Denis V Titov et al. Nature Chemical Biology
- Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain
- (2011) Adam Ameur et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Histone H3 lysine 9 trimethylation and HP1γ favor inclusion of alternative exons
- (2011) Violaine Saint-André et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Pre-mRNA splicing is a determinant of histone H3K36 methylation
- (2011) S. Kim et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome
- (2011) R. A. Flynn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The In Vivo Kinetics of RNA Polymerase II Elongation during Co-Transcriptional Splicing
- (2011) Yehuda Brody et al. PLOS BIOLOGY
- c-Myc Regulates Transcriptional Pause Release
- (2010) Peter B. Rahl et al. CELL
- CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1
- (2010) B. Bartkowiak et al. GENES & DEVELOPMENT
- Splicing-Dependent RNA Polymerase Pausing in Yeast
- (2010) Ross D. Alexander et al. MOLECULAR CELL
- Relationship between nucleosome positioning and DNA methylation
- (2010) Ramakrishna K. Chodavarapu et al. NATURE
- Reciprocal intronic and exonic histone modification regions in humans
- (2010) Jason T Huff et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- First come, first served revisited: Factors affecting the same alternative splicing event have different effects on the relative rates of intron removal
- (2010) M. de la Mata et al. RNA
- A Unifying Model for the Selective Regulation of Inducible Transcription by CpG Islands and Nucleosome Remodeling
- (2009) Vladimir R. Ramirez-Carrozzi et al. CELL
- Stability, Flexibility, and Dynamic Interactions of Colliding RNA Polymerase II Elongation Complexes
- (2009) Hideaki Saeki et al. MOLECULAR CELL
- Differential chromatin marking of introns and expressed exons by H3K36me3
- (2009) Paulina Kolasinska-Zwierz et al. NATURE GENETICS
- Rates of in situ transcription and splicing in large human genes
- (2009) Jarnail Singh et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Tracking rates of transcription and splicing in vivo
- (2009) M Behfar Ardehali et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Nucleosome positioning as a determinant of exon recognition
- (2009) Hagen Tilgner et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Chromatin organization marks exon-intron structure
- (2009) Schraga Schwartz et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Neuronal cell depolarization induces intragenic chromatin modifications affecting NCAM alternative splicing
- (2009) I. E. Schor et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II
- (2009) C. Hodges et al. SCIENCE
- Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila
- (2009) S. Nechaev et al. SCIENCE
- X Inactivation Counting and Choice Is a Stochastic Process: Evidence for Involvement of an X-Linked Activator
- (2008) Kim Monkhorst et al. CELL
- Intron Delays and Transcriptional Timing during Development
- (2008) Ian A. Swinburne et al. DEVELOPMENTAL CELL
- NELF-mediated stalling of Pol II can enhance gene expression by blocking promoter-proximal nucleosome assembly
- (2008) D. A. Gilchrist et al. GENES & DEVELOPMENT
- NELF and GAGA Factor Are Linked to Promoter-Proximal Pausing at Many Genes in Drosophila
- (2008) C. Lee et al. MOLECULAR AND CELLULAR BIOLOGY
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now