Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris

Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers

(2017) Tommy Harding et al.   Frontiers in Microbiology

Tempo and mode of genome evolution in a 50,000-generation experiment

(2016) Olivier Tenaillon et al.   NATURE

Global Metabolic Responses to Salt Stress in Fifteen Species

(2016) Daniel C. Sévin et al.   PLoS One

Prediction and characterization of protein-protein interaction network in Bacillus licheniformis WX-02

(2016) Yi-Chao Han et al.   Scientific Reports

Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris

(2015) Aifen Zhou et al.   ISME Journal

First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes

(2015) Alejandra Rodríguez-Verdugo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Polyamines function in stress tolerance: from synthesis to regulation

(2015) Ji-Hong Liu et al.   Frontiers in Plant Science

Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations

(2014) Troy E. Sandberg et al.   MOLECULAR BIOLOGY AND EVOLUTION

Multihost Experimental Evolution of the Pathogen Ralstonia solanacearum Unveils Genes Involved in Adaptation to Plants

(2014) Alice Guidot et al.   MOLECULAR BIOLOGY AND EVOLUTION

Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation

(2014) W. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution in Microbes

(2013) Edo Kussell   Annual Review of Biophysics

Characterization of NaCl tolerance in Desulfovibrio vulgaris Hildenborough through experimental evolution

(2013) Aifen Zhou et al.   ISME Journal

Genome dynamics during experimental evolution

(2013) Jeffrey E. Barrick et al.   NATURE REVIEWS GENETICS

Evolution after Introduction of a Novel Metabolic Pathway Consistently Leads to Restoration of Wild-Type Physiology

(2013) Sean Michael Carroll et al.   PLoS Genetics

Developing insights into the mechanisms of evolution of bacterial pathogens from whole-genome sequences

(2012) Josephine Bryant et al.   Future Microbiology

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

(2012) JEREMY R. DETTMAN et al.   MOLECULAR ECOLOGY

The Molecular Diversity of Adaptive Convergence

(2012) O. Tenaillon et al.   SCIENCE

Experimental evolution

(2012) Tadeusz J. Kawecki et al.   TRENDS IN ECOLOGY & EVOLUTION

Laboratory evolution of Geobacter sulfurreducens for enhanced growth on lactate via a single-base-pair substitution in a transcriptional regulator

(2011) Zarath M Summers et al.   ISME Journal

Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution

(2011) R. DHAR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Untargeted metabolic footprinting reveals a surprising breadth of metabolite uptake and release by Synechococcus sp. PCC 7002

(2011) Richard Baran et al.   Molecular BioSystems

How sulphate-reducing microorganisms cope with stress: lessons from systems biology

(2011) Jizhong Zhou et al.   NATURE REVIEWS MICROBIOLOGY

Negative Epistasis Between Beneficial Mutations in an Evolving Bacterial Population

(2011) A. I. Khan et al.   SCIENCE

Diminishing Returns Epistasis Among Beneficial Mutations Decelerates Adaptation

(2011) H.-H. Chou et al.   SCIENCE

Systematic mapping of two component response regulators to gene targets in a model sulfate reducing bacterium

(2011) Lara Rajeev et al.   GENOME BIOLOGY

Metabolite Identification inSynechococcus sp. PCC 7002Using Untargeted Stable Isotope Assisted Metabolite Profiling

(2010) Richard Baran et al.   ANALYTICAL CHEMISTRY

Next-generation sequencing as a tool to study microbial evolution

(2010) MICHAEL A. BROCKHURST et al.   MOLECULAR ECOLOGY

Global Transcriptional, Physiological, and Metabolite Analyses of the Responses of Desulfovibrio vulgaris Hildenborough to Salt Adaptation

(2009) Z. He et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of isothermal microcalorimetry to monitor microbial activities

(2009) Olivier Braissant et al.   FEMS MICROBIOLOGY LETTERS

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Compensatory Evolution of Gene Regulation in Response to Stress by Escherichia coli Lacking RpoS

(2009) Daniel M. Stoebel et al.   PLoS Genetics