Comparing tree shapes: beyond symmetry

TNT version 1.5, including a full implementation of phylogenetic morphometrics

(2016) Pablo A. Goloboff et al.   CLADISTICS

Characterizing and Comparing Phylogenies from their Laplacian Spectrum

(2015) Eric Lewitus et al.   SYSTEMATIC BIOLOGY

Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees

(2014) Daniel L. Rabosky   PLoS One

Practical Performance of Tree Comparison Metrics

(2014) Mary K. Kuhner et al.   SYSTEMATIC BIOLOGY

Recovering speciation and extinction dynamics based on phylogenies

(2013) T. Stadler   JOURNAL OF EVOLUTIONARY BIOLOGY

Modelling tree shape and structure in viral phylodynamics

(2013) S. D. W. Frost et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Mapping the Shapes of Phylogenetic Trees from Human and Zoonotic RNA Viruses

(2013) Art F. Y. Poon et al.   PLoS One

A PARAMETRIC METHOD FOR ASSESSING DIVERSIFICATION-RATE VARIATION IN PHYLOGENETIC TREES

(2012) Premal Shah et al.   EVOLUTION

A new balance index for phylogenetic trees

(2012) Arnau Mir et al.   MATHEMATICAL BIOSCIENCES

Robinson-Foulds Supertrees

(2010) Mukul S Bansal et al.   Algorithms for Molecular Biology

A metric for rooted trees with unlabeled vertices based on nested parentheses

(2010) Chan-Shuo Wu et al.   THEORETICAL COMPUTER SCIENCE

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Weighting against homoplasy improves phylogenetic analysis of morphological data sets

(2008) Pablo A. Goloboff et al.   CLADISTICS

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Calculating SPR distances between trees

(2007) Pablo A. Goloboff   CLADISTICS