Recovering speciation and extinction dynamics based on phylogenies

Linking the Investigations of Character Evolution and Species Diversification

(2012) Karen Magnuson-Ford et al.   AMERICAN NATURALIST

TEMPO AND MODE IN PLANT BREEDING SYSTEM EVOLUTION

(2012) Emma E. Goldberg et al.   EVOLUTION

Global Correlations in Tropical Tree Species Richness and Abundance Reject Neutrality

(2012) R. E. Ricklefs et al.   SCIENCE

Estimating Speciation and Extinction Rates for Phylogenies of Higher Taxa

(2012) Tanja Stadler et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

A Bayesian framework to estimate diversification rates and their variation through time and space

(2011) Daniele Silvestro et al.   BMC EVOLUTIONARY BIOLOGY

EVOLUTIONARY DIVERSIFICATION OF REEF CORALS: A COMPARISON OF THE MOLECULAR AND FOSSIL RECORDS

(2011) Carl Simpson et al.   EVOLUTION

THE IMPACT OF GENE-TREE/SPECIES-TREE DISCORDANCE ON DIVERSIFICATION-RATE ESTIMATION

(2011) Frank T. Burbrink et al.   EVOLUTION

NEUTRAL BIODIVERSITY THEORY CAN EXPLAIN THE IMBALANCE OF PHYLOGENETIC TREES BUT NOT THE TEMPO OF THEIR DIVERSIFICATION

(2011) T. Jonathan Davies et al.   EVOLUTION

Inferring Speciation and Extinction Rates under Different Sampling Schemes

(2011) S. Hohna et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimating the Basic Reproductive Number from Viral Sequence Data

(2011) Tanja Stadler et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Molecular Phylogenetic Signature of Clades in Decline

(2011) Tiago B. Quental et al.   PLoS One

Inferring speciation and extinction processes from extant species data

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reconciling molecular phylogenies with the fossil record

(2011) H. Morlon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mammalian phylogeny reveals recent diversification rate shifts

(2011) T. Stadler   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

(2011) R. S. Etienne et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification

(2011) R. W. Meredith et al.   SCIENCE

Interplay Between Changing Climate and Species' Ecology Drives Macroevolutionary Dynamics

(2011) T. H. G. Ezard et al.   SCIENCE

Phylogenetic Inference of Reciprocal Effects between Geographic Range Evolution and Diversification

(2011) Emma E. Goldberg et al.   SYSTEMATIC BIOLOGY

Simulating Trees with a Fixed Number of Extant Species

(2011) Tanja Stadler   SYSTEMATIC BIOLOGY

Prolonging the Past Counteracts the Pull of the Present: Protracted Speciation Can Explain Observed Slowdowns in Diversification

(2011) Rampal S. Etienne et al.   SYSTEMATIC BIOLOGY

The contour of splitting trees is a Lévy process

(2010) Amaury Lambert   ANNALS OF PROBABILITY

Sampling-through-time in birth–death trees

(2010) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Equilibrium speciation dynamics in a model adaptive radiation of island lizards

(2010) D. L. Rabosky et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Species Selection Maintains Self-Incompatibility

(2010) E. E. Goldberg et al.   SCIENCE

Quantitative Traits and Diversification

(2010) Richard G. FitzJohn   SYSTEMATIC BIOLOGY

Slowdowns in Diversification Rates from Real Phylogenies May Not be Real

(2010) Natalie Cusimano et al.   SYSTEMATIC BIOLOGY

Diversity dynamics: molecular phylogenies need the fossil record

(2010) Tiago B. Quental et al.   TRENDS IN ECOLOGY & EVOLUTION

Inferring the Dynamics of Diversification: A Coalescent Approach

(2010) Hélène Morlon et al.   PLOS BIOLOGY

EXPLOSIVE RADIATION OR CRYPTIC MASS EXTINCTION? INTERPRETING SIGNATURES IN MOLECULAR PHYLOGENIES

(2009) Michael D. Crisp et al.   EVOLUTION

EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES

(2009) Daniel L. Rabosky   EVOLUTION

On incomplete sampling under birth–death models and connections to the sampling-based coalescent

(2009) Tanja Stadler   JOURNAL OF THEORETICAL BIOLOGY

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenies reveal new interpretation of speciation and the Red Queen

(2009) Chris Venditti et al.   NATURE

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

(2009) M. E. Alfaro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Estimating Trait-Dependent Speciation and Extinction Rates from Incompletely Resolved Phylogenies

(2009) Richard G. FitzJohn et al.   SYSTEMATIC BIOLOGY

A Method for Investigating Relative Timing Information on Phylogenetic Trees

(2009) Daniel Ford et al.   SYSTEMATIC BIOLOGY

Gene tree discordance, phylogenetic inference and the multispecies coalescent

(2009) James H. Degnan et al.   TRENDS IN ECOLOGY & EVOLUTION

The Ecological Dynamics of Clade Diversification and Community Assembly

(2008) Mark A. McPeek   AMERICAN NATURALIST

Phylogenetic Approaches to the Study of Extinction

(2008) Andy Purvis   Annual Review of Ecology Evolution and Systematics

EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?

(2008) Daniel L. Rabosky et al.   EVOLUTION

The conditioned reconstructed process

(2008) Tanja Gernhard   JOURNAL OF THEORETICAL BIOLOGY

Lineages-through-time plots of neutral models for speciation

(2008) Tanja Stadler   MATHEMATICAL BIOSCIENCES

Density-dependent diversification in North American wood warblers

(2008) D. L Rabosky et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Density-Dependent Cladogenesis in Birds

(2008) Albert B Phillimore et al.   PLOS BIOLOGY