Diet and microbiota in inflammatory bowel disease: The gut in disharmony

Diet as a Trigger or Therapy for Inflammatory Bowel Diseases

(2017) James D. Lewis et al.   GASTROENTEROLOGY

Protein- and zinc-deficient diets modulate the murine microbiome and metabolic phenotype

(2016) J. Mayneris-Perxachs et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Manipulation of the gut microbiota using resistant starch is associated with protection against colitis-associated colorectal cancer in rats

(2016) Ying Hu et al.   CARCINOGENESIS

Reduced Abundance of Butyrate-Producing Bacteria Species in the Fecal Microbial Community in Crohn's Disease

(2016) Kenichiro Takahashi et al.   DIGESTION

The Search for Causative Environmental Factors in Inflammatory Bowel Disease

(2016) Gerhard Rogler et al.   DIGESTIVE DISEASES

Dietary Patterns and Risk of Inflammatory Bowel Disease in Europe

(2016) Antoine Racine et al.   INFLAMMATORY BOWEL DISEASES

A Single Species of Clostridium Subcluster XIVa Decreased in Ulcerative Colitis Patients

(2016) Kozue Takeshita et al.   INFLAMMATORY BOWEL DISEASES

Dietary Non-digestible Polysaccharides Ameliorate Intestinal Epithelial Barrier Dysfunction in IL-10 Knockout Mice

(2016) Honggang Wang et al.   Journal of Crohns & Colitis

Dietary Fermentable Fiber Reduces Intestinal Barrier Defects and Inflammation in Colitic Mice

(2016) Tran Van Hung et al.   JOURNAL OF NUTRITION

Dietary factors in the development of type 1 diabetes

(2016) Suvi M Virtanen   PEDIATRIC DIABETES

Fecal microbiota in pouchitis and ulcerative colitis

(2016) Kai-Yu Li et al.   WORLD JOURNAL OF GASTROENTEROLOGY

Ulcerative Colitis and Crohn’s Disease Are Associated with Decreased Serum Selenium Concentrations and Increased Cardiovascular Risk

(2016) Teresa Castro Aguilar-Tablada et al.   Nutrients

Colonic Mucosal Epigenome and Microbiome Development in Children and Adolescents

(2016) R. Alan Harris et al.   Journal of Immunology Research

Inflammatory Bowel Disease in Immigrants to Canada And Their Children: A Population-Based Cohort Study

(2015) Eric I Benchimol et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

ATG16L1: A multifunctional susceptibility factor in Crohn disease

(2015) Mohammad Salem et al.   Autophagy

The Probiotic VSL#3 Has Anti-inflammatory Effects and Could Reduce Endoscopic Recurrence After Surgery for Crohn's Disease

(2015) Richard N. Fedorak et al.   Clinical Gastroenterology and Hepatology

The Impact of Dietary Interventions on the Symptoms of Inflammatory Bowel Disease: A Systematic Review

(2015) Ashley Charlebois et al.   CRITICAL REVIEWS IN FOOD SCIENCE AND NUTRITION

Role of endoplasmic reticulum stress and autophagy as interlinking pathways in the pathogenesis of inflammatory bowel disease

(2015) Shuhei Hosomi et al.   CURRENT OPINION IN GASTROENTEROLOGY

Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial

(2015) Paul Moayyedi et al.   GASTROENTEROLOGY

Geographical patterns of the standing and active human gut microbiome in health and IBD

(2015) Ateequr Rehman et al.   GUT

Recent Advances in Characterizing the Gastrointestinal Microbiome in Crohnʼs Disease

(2015) Emily K. Wright et al.   INFLAMMATORY BOWEL DISEASES

A MicroRNA Signature in Pediatric Ulcerative Colitis

(2015) Georgios Koukos et al.   INFLAMMATORY BOWEL DISEASES

Role of Probiotics in Crohn’s Disease and in Pouchitis

(2015) Mario Guslandi   JOURNAL OF CLINICAL GASTROENTEROLOGY

Progress and Challenges in Developing Metabolic Footprints from Diet in Human Gut Microbial Cometabolism

(2015) Linda C Duffy et al.   JOURNAL OF NUTRITION

Step-up fecal microbiota transplantation strategy: a pilot study for steroid-dependent ulcerative colitis

(2015) Bota Cui et al.   Journal of Translational Medicine

Assessing DNA methylation in the developing human intestinal epithelium: potential link to inflammatory bowel disease

(2015) J Kraiczy et al.   Mucosal Immunology

Impact of Maternal Diet on the Epigenome during In Utero Life and the Developmental Programming of Diseases in Childhood and Adulthood

(2015) Ho-Sun Lee   Nutrients

Folic acid supplements and colorectal cancer risk: meta-analysis of randomized controlled trials

(2015) Tingting Qin et al.   Scientific Reports

Lower regional and temporal ultraviolet exposure is associated with increased rates and severity of inflammatory bowel disease hospitalisation

(2014) B. N. Limketkai et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

The Treatment-Naive Microbiome in New-Onset Crohn’s Disease

(2014) Dirk Gevers et al.   Cell Host & Microbe

Probiotics and Antibiotics in IBD

(2014) Harry Sokol   DIGESTIVE DISEASES

Serum antibodies to microbial antigens for Crohn’s disease progression

(2014) Yao Xiong et al.   EUROPEAN JOURNAL OF GASTROENTEROLOGY & HEPATOLOGY

Partial Enteral Nutrition with a Crohnʼs Disease Exclusion Diet Is Effective for Induction of Remission in Children and Young Adults with Crohnʼs Disease

(2014) Rotem Sigall-Boneh et al.   INFLAMMATORY BOWEL DISEASES

Fecal microbiota transplantation as therapy for inflammatory bowel disease: A systematic review and meta-analysis

(2014) Ruben J. Colman et al.   Journal of Crohns & Colitis

Fecal microbiota transplantation through mid-gut for refractory Crohn's disease: Safety, feasibility, and efficacy trial results

(2014) Bota Cui et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

An anti-inflammatory diet as treatment for inflammatory bowel disease: a case series report

(2014) Barbara C Olendzki et al.   Nutrition Journal

Dietary history contributes to enterotype-like clustering and functional metagenomic content in the intestinal microbiome of wild mice

(2014) Jun Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbial metabolite butyrate regulates intestinal macrophage function via histone deacetylase inhibition

(2014) Pamela V. Chang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The microbiome in inflammatory bowel disease and its modulation as a therapeutic manoeuvre

(2014) A. L. Hart et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Early Life Nutrition, Epigenetics and Programming of Later Life Disease

(2014) Mark Vickers   Nutrients

Review article: evidence-based dietary advice for patients with inflammatory bowel disease

(2013) E. Richman et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Genetic association and functional role of Crohn disease risk alleles involved in microbial sensing, autophagy, and endoplasmic reticulum (ER) stress

(2013) Eveline Hoefkens et al.   Autophagy

You are what you eat, and so are your children: the impact of micronutrients on the epigenetic programming of offspring

(2013) Kimberly Vanhees et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Faecalibacterium prausnitzii and human intestinal health

(2013) S Miquel et al.   CURRENT OPINION IN MICROBIOLOGY

A Prospective Study of Long-term Intake of Dietary Fiber and Risk of Crohn's Disease and Ulcerative Colitis

(2013) Ashwin N. Ananthakrishnan et al.   GASTROENTEROLOGY

Advances in inflammatory bowel disease pathogenesis: linking host genetics and the microbiome

(2013) Dan Knights et al.   GUT

Long-term intake of dietary fat and risk of ulcerative colitis and Crohn's disease

(2013) Ashwin N Ananthakrishnan et al.   GUT

Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces

(2013) T. Takada et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Active Crohn's disease is associated with low vitamin D levels

(2013) Søren Peter Jørgensen et al.   Journal of Crohns & Colitis

Folate intake and the risk of upper gastrointestinal cancers: A systematic review and meta-analysis

(2013) Martin Tio et al.   JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation

(2013) Nicholas Arpaia et al.   NATURE

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Dietary Selenium Deficiency Exacerbates DSS-Induced Epithelial Injury and AOM/DSS-Induced Tumorigenesis

(2013) Caitlyn W. Barrett et al.   PLoS One

The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis

(2013) P. M. Smith et al.   SCIENCE

Gut Microbial Flora, Prebiotics, and Probiotics in IBD: Their Current Usage and Utility

(2013) Franco Scaldaferri et al.   Biomed Research International

Systematic review: faecal microbiota transplantation in the management of inflammatory bowel disease

(2012) J. L. Anderson et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Microbiota of De-Novo Pediatric IBD: Increased Faecalibacterium Prausnitzii and Reduced Bacterial Diversity in Crohn's But Not in Ulcerative Colitis

(2012) Richard Hansen et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Dietary folate does not significantly affect the intestinal microbiome, inflammation or tumorigenesis in azoxymethane–dextran sodium sulphate-treated mice

(2012) Amanda J. MacFarlane et al.   BRITISH JOURNAL OF NUTRITION

The Impact of the Gut Microbiota on Human Health: An Integrative View

(2012) Jose C. Clemente et al.   CELL

Food and the gut microbiota in inflammatory bowel diseases

(2012) Lindsey G. Albenberg et al.   CURRENT OPINION IN GASTROENTEROLOGY

Epigenetics: Concepts and relevance to IBD pathogenesis

(2012) Melania Scarpa et al.   INFLAMMATORY BOWEL DISEASES

Blautia faecis sp. nov., isolated from human faeces

(2012) S.-K. Park et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10 −/− mice

(2012) Suzanne Devkota et al.   NATURE

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

(2012) Luke Jostins et al.   NATURE

Functions of DNA methylation: islands, start sites, gene bodies and beyond

(2012) Peter A. Jones   NATURE REVIEWS GENETICS

Crohn's Disease-Associated Adherent-Invasive Escherichia coli Adhesion Is Enhanced by Exposure to the Ubiquitous Dietary Polysaccharide Maltodextrin

(2012) Kourtney P. Nickerson et al.   PLoS One

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Disease Tolerance as a Defense Strategy

(2012) R. Medzhitov et al.   SCIENCE

Use of butyrate or glutamine in enema solution reduces inflammation and fibrosis in experimental diversion colitis

(2012) Rodrigo Goulart Pacheco   WORLD JOURNAL OF GASTROENTEROLOGY

Low exposure to sunlight is a risk factor for Crohn’s disease

(2011) V. Nerich et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Treating Clostridium difficile Infection With Fecal Microbiota Transplantation

(2011) Johan S. Bakken et al.   Clinical Gastroenterology and Hepatology

Hygiene Hypothesis and Autoimmune Diseases

(2011) Graham A. W. Rook   CLINICAL REVIEWS IN ALLERGY & IMMUNOLOGY

Commensal bacteria

(2011) Eamonn M.M. Quigley   CURRENT OPINION IN CLINICAL NUTRITION AND METABOLIC CARE

Development of the Human Gastrointestinal Microbiota and Insights From High-Throughput Sequencing

(2011) Maria Gloria Dominguez-Bello et al.   GASTROENTEROLOGY

The Commensal Microbiota and Enteropathogens in the Pathogenesis of Inflammatory Bowel Diseases

(2011) Benoit Chassaing et al.   GASTROENTEROLOGY

Increasing Incidence and Prevalence of the Inflammatory Bowel Diseases With Time, Based on Systematic Review

(2011) Natalie A. Molodecky et al.   GASTROENTEROLOGY

CpG islands and the regulation of transcription

(2011) A. M. Deaton et al.   GENES & DEVELOPMENT

Nod2 is essential for temporal development of intestinal microbial communities

(2011) A. Rehman et al.   GUT

Crohn's disease: NOD2, autophagy and ER stress converge

(2011) T. Fritz et al.   GUT

Intestinal Bacterial Colonization Induces Mutualistic Regulatory T Cell Responses

(2011) Markus B. Geuking et al.   IMMUNITY

Regulation of the Antimicrobial Response by NLR Proteins

(2011) Eran Elinav et al.   IMMUNITY

Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn’s disease using terminal restriction fragment length polymorphism analysis

(2011) Akira Andoh et al.   JOURNAL OF GASTROENTEROLOGY

Commensal microbiota and myelin autoantigen cooperate to trigger autoimmune demyelination

(2011) Kerstin Berer et al.   NATURE

Peripheral education of the immune system by colonic commensal microbiota

(2011) Stephanie K. Lathrop et al.   NATURE

Human nutrition, the gut microbiome and the immune system

(2011) Andrew L. Kau et al.   NATURE

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

Genetics and pathogenesis of inflammatory bowel disease

(2011) Bernard Khor et al.   NATURE

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

The role of bacteria and pattern-recognition receptors in Crohn's disease

(2011) Si Ming Man et al.   Nature Reviews Gastroenterology & Hepatology

Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype

(2011) P. Rausch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Commensal flora and the regulation of inflammatory and autoimmune responses

(2011) Jan Kranich et al.   SEMINARS IN IMMUNOLOGY

The ever-expanding function of NOD2: autophagy, viral recognition, and T cell activation

(2011) Michael H. Shaw et al.   TRENDS IN IMMUNOLOGY

Probiotics in Inflammatory Bowel Diseases and Associated Conditions

(2011) David Mack   Nutrients

Intestinal Bacteria and the Regulation of Immune Cell Homeostasis

(2010) David A. Hill et al.   Annual Review of Immunology

Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis

(2010) Wendy S. Garrett et al.   Cell Host & Microbe

Fat intake interacts with polymorphisms of Caspase9, FasLigand and PPARgamma apoptotic genes in modulating Crohn’s disease activity

(2010) Paula Ferreira et al.   CLINICAL NUTRITION

Endoplasmic reticulum stress: implications for inflammatory bowel disease pathogenesis

(2010) Arthur Kaser et al.   CURRENT OPINION IN GASTROENTEROLOGY

The complex interplay of NOD-like receptors and the autophagy machinery in the pathophysiology of Crohn disease

(2010) Susanne Billmann-Born et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Antibiotic use and inflammatory bowel diseases in childhood

(2010) A. Hviid et al.   GUT

Depletion of luminal iron alters the gut microbiota and prevents Crohn's disease-like ileitis

(2010) T. Werner et al.   GUT

Gut-Residing Segmented Filamentous Bacteria Drive Autoimmune Arthritis via T Helper 17 Cells

(2010) Hsin-Jung Wu et al.   IMMUNITY

Therapeutic transplantation of the distal gut microbiota

(2010) A Khoruts et al.   Mucosal Immunology

Investigating micronutrients and epigenetic mechanisms in relation to inflammatory bowel disease

(2010) Matthew Barnett et al.   MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS

Diet, gut microbiota and immune responses

(2010) Kendle M Maslowski et al.   NATURE IMMUNOLOGY

Proinflammatory T-cell responses to gut microbiota promote experimental autoimmune encephalomyelitis

(2010) Y. K. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns

(2010) M. G. Dominguez-Bello et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nutritional developmental epigenomics: immediate and long-lasting effects

(2010) L. Attig et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

Lineage Relationship Analysis of RORγt+Innate Lymphoid Cells

(2010) Shinichiro Sawa et al.   SCIENCE

Early nutritional environment: focus on health effects of microbiota and probiotics

(2010) K. Laitinen et al.   Beneficial Microbes

Early life: gut microbiota and immune development in infancy

(2010) R. Martin et al.   Beneficial Microbes

Human gut microbiome: the second genome of human body

(2010) Baoli Zhu et al.   Protein & Cell

Fatty Acids, IL6 and TNFα Polymorphisms: An Example of Nutrigenetics in Crohn's Disease

(2009) Catarina Sousa Guerreiro et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

The immunopathogenesis of Crohn's disease: a three-stage model

(2009) Gavin W Sewell et al.   CURRENT OPINION IN IMMUNOLOGY

Linoleic acid, a dietary n-6 polyunsaturated fatty acid, and the aetiology of ulcerative colitis: a nested case-control study within a European prospective cohort study

(2009)   GUT

The Key Role of Segmented Filamentous Bacteria in the Coordinated Maturation of Gut Helper T Cell Responses

(2009) Valérie Gaboriau-Routhiau et al.   IMMUNITY

Disordered macrophage cytokine secretion underlies impaired acute inflammation and bacterial clearance in Crohn's disease

(2009) Andrew M. Smith et al.   JOURNAL OF EXPERIMENTAL MEDICINE

Systematic Review: The Role of Breastfeeding in the Development of Pediatric Inflammatory Bowel Disease

(2009) Andrew R. Barclay et al.   JOURNAL OF PEDIATRICS

NOD2 stimulation induces autophagy in dendritic cells influencing bacterial handling and antigen presentation

(2009) Rachel Cooney et al.   NATURE MEDICINE

Bacterial Community Variation in Human Body Habitats Across Space and Time

(2009) E. K. Costello et al.   SCIENCE

DNA hypomethylation in cancer cells

(2009) Melanie Ehrlich   Epigenomics

Biostructure of Fecal Microbiota in Healthy Subjects and Patients With Chronic Idiopathic Diarrhea

(2008) Alexander Swidsinski et al.   GASTROENTEROLOGY

Microbial Influences in Inflammatory Bowel Diseases

(2008) R. Balfour Sartor   GASTROENTEROLOGY

Microbes in Gastrointestinal Health and Disease

(2008) Andrew S. Neish   GASTROENTEROLOGY

Disorders of a modern lifestyle: reconciling the epidemiology of inflammatory bowel diseases

(2008) C. N Bernstein et al.   GUT

Folate status in various pathophysiological conditions

(2008) Nissar Ahmad Wani et al.   IUBMB LIFE

Use of a novel genetic mouse model to investigate the role of folate in colitis-associated colon cancer

(2008) Robert S. Chapkin et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Innate immunity and intestinal microbiota in the development of Type 1 diabetes

(2008) Li Wen et al.   NATURE

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE