Article
Microbiology
Rashidin Abdugheni, Yu-Jing Wang, Dan-Hua Li, Meng-Xuan Du, Chang Liu, Nan Zhou, Shuang-Jiang Liu
Summary: A new anaerobic and motile bacterium strain NSJ-9(T) was isolated from human faeces. It belongs to a new genus in the family Lachnospiraceae based on its cellular and genetic characteristics, showing high similarity to some known species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Maki Kitahara, Yuko Shigeno, Mari Shime, Yuki Matsumoto, Shota Nakamura, Daisuke Motooka, Shota Fukuoka, Hiroyoshi Nishikawa, Yoshimi Benno
Summary: Six strains of novel bacteria were isolated from human faeces and classified into three different species based on phylogenetic and DNA analysis. The newly proposed species in the family Ruminococcaceae are Vescimonas coprocola, Vescimonas fastidiosa and Pusillimonas faecalis, with distinctive genetic and phenotypic characteristics.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Jun-Hui Feng, Yu-Xiao Chang, Liang-Hui Li, Meng-Meng Li, Zong-Yu Huang, Ni Han, Wen-Jun Li, Rui-Fu Yang, Ping-Hua Qu, Yu-Jing Bi
Summary: A novel obligate anaerobic organism, Copranaerobaculum intestinale, was isolated from human faeces collected in Beijing, PR China. It represents a distinct lineage within the family Erysipelotrichaceae, with unique cell morphology and physiological characteristics.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Rashidin Abdugheni, Dan-Hua Li, Yu-Jing Wang, Meng-Xuan Du, Nan Zhou, Chang Liu, Shuang- Jiang Liu
Summary: This study isolated, cultivated, and characterized five novel anaerobic bacterial strains from human fecal samples. Based on taxonomic results, two new genera and five new species were proposed.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Multidisciplinary Sciences
Afaf Hamame, Reham Magdy Wasfy, Cheikh Ibrahima Lo, Florence Fenollar, Didier Raoult, Pierre-Edouard Fournier, Linda Houhamdi
Summary: Two new bacterial strains, Marseille-P2698(T) and Marseille-P2260(T), were isolated from human stools using the culturomic method. These two strains were fully described using the taxonogenomic approach. Marseille-P2698(T) was identified as a Gram-negative, motile, non-spore-forming, rod-shaped bacterium, while Marseille-P2260(T) was identified as a Gram-positive, motile, spore-forming rod-shaped bacterium.
SCIENTIFIC REPORTS
(2023)
Article
Microbiology
Juseok Kim, Hye Seon Song, Joon Yong Kim, Tae Woong Whon, Won-Hyong Chung, Young -Do Nam, Yoon-E Choi, Seong Woon Roh
Summary: A novel bacterial strain, CBA7301T, was isolated from human faeces and identified as a member of the genus Bacteroides. It showed 96.2% similarity in 16S rRNA gene sequence with its closest related species, Bacteroides faecichinchillae JCM 17102T. CBA7301T is a Gram-stain-negative, strictly anaerobic, rod-shaped bacterium that grows optimally at 30-35°C, pH 7.0, and 0.5% NaCl.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Boram Seo, Kyungchan Jeon, Inwoo Baek, Yung Mi Lee, Kiwoon Baek, GwangPyo Ko
Summary: Strain SNUG30386(T) is an obligately anaerobic, Gram-stain-positive and spore-forming bacterium belonging to the family Lachnospiraceae. Phylogenetic analysis based on 16S rRNA gene sequences suggests that it represents a novel species within the genus Clostridium, which has been proposed as Clostridium fessum sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Atsushi Hisatomi, Moriya Ohkuma, Mitsuo Sakamoto
Summary: Two strains of obligately anaerobic, Gram-stain-positive, small-chain coccobacilli were isolated from faecal samples of healthy Japanese humans and named Sellimonas catena sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Xin-Wei Sun, Rashidin Abdugheni, Hao-Jie Huang, Yu-Jing Wang, Min-Zhi Jiang, Chang Liu, Nan Zhou, He Jiang, Shuang-Jiang Liu
Summary: A novel species of the genus Bacteroides, named Bacteroides propionicigenes, was isolated from the feces of a healthy adult in China. The strain showed distinct phenotypic and genotypic characteristics, supporting its classification as a new species.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Yuanqiang Zou, Xiaoqian Lin, Wenbin Xue, Li Tuo, Ming-Sheng Chen, Xiao-Hui Chen, Cheng-hang Sun, Feina Li, Shao-wei Liu, Ying Dai, Karsten Kristiansen, Liang Xiao
Summary: Two novel anaerobic strains, designated AF52-21(T) and CM04-06(T), were isolated from faeces of healthy Chinese donors using a pure culture strategy. Phylogenetic analysis revealed that these strains clustered with Faecalibacterium species, supporting their recognition as two new species within the genus. Genomic analysis showed differences below the proposed species threshold, confirming their uniqueness.
SCIENTIFIC REPORTS
(2021)
Article
Microbiology
Andrei Chaplin, Viktoria A. Shcherbakova, Alla P. Pikina, Sofia R. Sokolova, Margarita Korzhanova, Vera A. Belova, Dmitriy O. Korostin, Denis Rebrikov, Dmitry A. Kardonsky, Anatoly S. Urban, Natalia B. Zakharzhevskaya, Natalia E. Suzina, Irina Podoprigora, Milana S. Das, Daria O. Kholopova, Boris A. Efimov
Summary: Three novel strains of bacteria were isolated from the feces of healthy human children. They were characterized by their metabolic products and genetic similarities. Based on phylogenetic and chemotaxonomic analyses, two new species within the family Lachnospiraceae were proposed.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Yajun Ge, Gui Zhang, Jing Yang, Xin-He Lai, Dong Jin, Shan Lu, Ji Pu, Ying Huang, Xuelian Luo, Han Zheng, Xiaoyan Zhang, Jianguo Xu
Summary: Four unknown strains isolated from fresh feces of healthy humans in PR China have been identified as two novel species in the genus Bacteroides, named Bacteroides luhongzhouii sp. nov. and Bacteroides zhangwenhongii sp. nov. The strains exhibited distinct phenotypic, biochemical, and genetic differences from their closest relatives, suggesting they represent unique taxa within the genus.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Microbiology
Ping-Hua Qu, Hai-Min Luo, Jun-Hui Feng, Song Li, Cha Chen, Lei Dong, Yu-Zhen Ming, Wen-Jun Li, Ying Lin
Summary: Strain SZY PN-1(T) is a novel Gram-negative, yellow-pigmented bacterium isolated from a skin sample of a healthy Chinese male. It shares high similarities with two invalid-published species, forming a separate branch within the family Sphingosinicellaceae based on phylogenetic analysis. A new genus and species, Sandaracinobacteroides hominis gen. nov., sp. nov., is proposed based on its phenotypic and genotypic features.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Microbiology
Rita Zgheib, Ahmad Ibrahim, Hussein Anani, Sokhna Ndongo, Melhem Bilen, Nicholas Armstrong, Magali Richez, Didier Raoult, Pierre-Edouard Fournier
Summary: Two new genera, Neglectibacter gen. nov. and Scatolibacter gen. nov., were identified from stool samples using the culturomics approach, with strains Marseille-P2265(T) and Marseille-P3890(T) being the type strains of Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., respectively. Genomic comparisons with closely related species revealed lower dDDH, OrthoANI, and AAI values, indicating these strains represent novel taxa within the family Oscillospiraceae.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Claire Belkhou, Raul Tito Tadeo, Rodrigo Bacigalupe, Mireia Valles-Colomer, Samuel Chaffron, Marie Joossens, Alexandra Obregon, Luis Marin Reyes, Omar Trujillo, Geert R. B. Huys, Jeroen Raes
Summary: A novel Treponema species, named Treponema peruense, was isolated from the fecal sample of an individual residing in a remote Amazonian community in Peru. This bacterium represents the first commensal Treponema isolated from human fecal microbiota of remote populations.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2021)
Article
Psychiatry
Emiko Aizawa, Hirokazu Tsuji, Takashi Asahara, Takuya Takahashi, Toshiya Teraishi, Sumiko Yoshida, Norie Koga, Kotaro Hattori, Miho Ota, Hiroshi Kunugi
FRONTIERS IN PSYCHIATRY
(2019)
Article
Microbiology
Yukitoshi Aoyagi, Ryuta Amamoto, Sungjin Park, Yusuke Honda, Kazuhito Shimamoto, Akira Kushiro, Hirokazu Tsuji, Hoshitaka Matsumoto, Kensuke Shimizu, Kouji Miyazaki, Satoshi Matsubara, Roy J. Shepherd
FRONTIERS IN MICROBIOLOGY
(2019)
Article
Endocrinology & Metabolism
Naohide Kurita, Kazuo Yamashiro, Takuma Kuroki, Ryota Tanaka, Takao Urabe, Yuji Ueno, Nobukazu Miyamoto, Masashi Takanashi, Hideki Shimura, Toshiki Inaba, Yuichiro Yamashiro, Koji Nomoto, Satoshi Matsumoto, Takuya Takahashi, Hirokazu Tsuji, Takashi Asahara, Nobutaka Hattori
JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM
(2020)
Article
Microbiology
T. Shima, R. Amamoto, C. Kaga, Y. Kado, T. Sasai, O. Watanabe, J. Shiinoki, K. Iwazaki, H. Shigemura, H. Tsuji
BENEFICIAL MICROBES
(2019)
Article
Nutrition & Dietetics
Takuya Sugimoto, Tatsuichiro Shima, Ryuta Amamoto, Chiaki Kaga, Yukiko Kado, Osamu Watanabe, Junko Shiinoki, Kaoru Iwazaki, Hiroko Shigemura, Hirokazu Tsuji, Satoshi Matsumoto
Article
Gastroenterology & Hepatology
Toshihiko Takada, Daisuke Chinda, Tatsuya Mikami, Kensuke Shimizu, Kosuke Oana, Shiro Hayamizu, Kuniaki Miyazawa, Tetsu Arai, Miyuki Katto, Yusuke Nagara, Hiroshi Makino, Akira Kushiro, Kenji Oishi, Shinsaku Fukuda
Article
Biotechnology & Applied Microbiology
Yuki Saito, Akira Shigehisa, Yohei Watanabe, Naoki Tsukuda, Kaoru Moriyama-Ohara, Taeko Hara, Satoshi Matsumoto, Hirokazu Tsuji, Takahiro Matsuki
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
(2020)
Article
Psychology, Biological
Noriyuki Miyata, Tomokazu Hata, Shu Takakura, Kazufumi Yoshihara, Chihiro Morita, Katsunaka Mikami, Koji Nomoto, Kouji Miyazaki, Hirokazu Tsuji, Nobuyuki Sudo
Summary: The study compared the serum metabolic profiles of female patients with restricting type anorexia nervosa (ANR) to healthy female controls, revealing lower amino acid levels and higher uremic toxins levels in the patients. Serum PCS levels were positively correlated with specific gut microbes in ANR patients. These findings suggest a potential role of gut microbes in the increased uremic toxins levels in ANR patients.
PHYSIOLOGY & BEHAVIOR
(2021)
Article
Ecology
Naoki Tsukuda, Kana Yahagi, Taeko Hara, Yohei Watanabe, Hoshitaka Matsumoto, Hiroshi Mori, Koichi Higashi, Hirokazu Tsuji, Satoshi Matsumoto, Ken Kurokawa, Takahiro Matsuki
Summary: This study explored the early life relationships between SCFA and gut microbiota by analyzing faecal samples collected from 12 subjects over the first two years of life. The research identified three distinct phases of SCFA profiles and their associations with specific gut microbiota. The results showed that butyrate production was linked to Clostridiales species and breastfeeding cessation, while formate production was associated with infant-type bifidobacterial species and HMO-derived fucose.
Article
Multidisciplinary Sciences
Ryuta Amamoto, Kazuhito Shimamoto, Sungjin Park, Hoshitaka Matsumoto, Kensuke Shimizu, Miyuki Katto, Hirokazu Tsuji, Satoshi Matsubara, Roy J. Shephard, Yukitoshi Aoyagi
Summary: Approximately 10% of elderly Japanese individuals may experience significant changes in gut microbiota within a year. Habitual intake of probiotics may help stabilize gut microbiota in the elderly.
SCIENTIFIC REPORTS
(2021)
Article
Microbiology
Hirotaka Shimizu, Katsuhiro Arai, Takashi Asahara, Takuya Takahashi, Hirokazu Tsuji, Satoshi Matsumoto, Ichiro Takeuchi, Reiko Kyodo, Yuichiro Yamashiro
Summary: This study found that anaerobic preparation of donor stool for fecal microbiota transplantation (FMT) can improve efficacy by enhancing the transfer of obligate anaerobes, although aerobic handling may decrease viable anaerobes in the fecal slurries. Aerobic-prep did not significantly influence the survival of facultative anaerobes.
Article
Microbiology
T. Shima, C. Kaga, K. Shimamoto, T. Sugimoto, Y. Kado, O. Watanabe, T. Suwa, R. Amamoto, H. Tsuji, S. Matsumoto
Summary: This study examined the effects of live LcS on the gut microbiome, organic acid profiles, defecatory symptoms, and serum viral antibody indexes in healthy Japanese adults. The presence of live LcS was associated with a healthy gut environment and inhibition of the reactivation of latent viruses in the host.
BENEFICIAL MICROBES
(2022)
Article
Multidisciplinary Sciences
Eiji Ishikawa, Tetsuya Yamada, Kazuaki Yamaji, Masaki Serata, Daichi Fujii, Yoshinori Umesaki, Hirokazu Tsuji, Koji Nomoto, Masahiro Ito, Nobuhiko Okada, Masato Nagaoka, Atsushi Gomi
Summary: The study revealed that a housekeeping sortase from Bifidobacterium bifidum YIT 10347 (BF-1) plays a critical role in adhesion to mucin. Multiple SDPs and pili appeared to work cooperatively in achieving adhesion, with the housekeeping sortase responsible for anchoring their substrates to the cell wall for proper biological function. Mutants lacking pilin or SDP exhibited similar adhesion properties to the wild type strain.
Article
Immunology
Mai Niikura, Satomi Atobe, Akira Takahashi, Yukiko Kado, Takuya Sugimoto, Hirokazu Tsuji, Kentaro Shimizu, Hiroshi Ogura, Takashi Asahara
Summary: A novel PA quantification system based on RT-qPCR was developed, which quickly and sensitively detected PA in clinical samples, and proved valuable in identifying infection status in ICU patients. Monitoring PA viable counts correlated with inflammatory responses of infected cells and aid in evaluating appropriate antibacterial treatment.
EMERGING MICROBES & INFECTIONS
(2021)
Article
Microbiology
Akira Kushiro, Kensuke Shimizu, Toshihiko Takada, Itsumi Kusunoki, Naomi Aiba
BIOSCIENCE OF MICROBIOTA FOOD AND HEALTH
(2019)